Ruditapes philippinarum (Manila clam): 132742208
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Entry
132742208 CDS
T09557
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132742208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132742208
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132742208
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
132742208
Messenger RNA biogenesis [BR:
rphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
132742208
DNA repair and recombination proteins [BR:
rphi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
132742208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-GeneID:
132742208
NCBI-ProteinID:
XP_060586522
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MNVGTRMLAIHKAVEHFDPKLKAKPKQVECWEHVLAGKHVIVTLPVGYGKSLIYQVLPDL
IRDVGKYEKPVVIVISPLNIIQSEQMDVLKRHNISSCKLSYFDEDGHSEIEQREFIQGIR
NGEFSIVFAHPEALLNTNSGKDLLIDSVFLENVAAVVIDECHIVEEWGQEFRTAFSKLRT
LPAIFENIPFLALSGTLTRKQMKKLPELLSLKNPVIVQDSPDRSNIFLEKVVKIKSTDSM
EIYEDIFKKECESLHRSPTTYPITLMFMPLYYISISAAYLKHLFGTVDITTSSYAVLYSR
QDKTVIQTTIEDLRSEKPRIRLVLTSSVAGMGFDPPSVERVIHARPPRNMSQYLQEIGRA
GRRGQKSKAILYYNNRDVAKNIPGIQEDILEYCKNNNKCLREMLLAPFGFTKSDKKESCC
SFCSGKNWSQITKPVLDEAGNGSDLGIVSELKNNPIIKVTGDNLDIYVRTDHKSLDKHKK
DLHLFASNIIFSRIAQPHMYSLRENSIPLSNLTSDLFLPHGHYTETLMSS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaggaacaagaatgcttgcaatccataaagctgtggaacattttgatccaaaa
ttaaaggcaaaaccaaaacaagttgaatgctgggagcacgttcttgcagggaagcatgtg
atcgtgaccctaccagttggttatggcaaaagtctgatttatcaagttttaccagactta
atacgggatgtcggaaagtatgaaaagccagttgtcatagttatatcaccacttaatatt
attcagagtgaacagatggatgtgttgaaacggcacaatattagttcatgcaaactgtca
tatttcgacgaagatggtcattctgaaatagaacaaagagaattcattcagggtataaga
aatggtgaattttcaattgtttttgctcacccagaagcactattgaacacaaactctgga
aaagaccttttgattgattctgtgtttctggaaaatgttgctgcagttgttattgatgag
tgccatattgttgaagaatggggacaagaatttcgaacagcatttagcaaattgagaacc
cttcctgcaatatttgagaacataccattccttgcattaagtggaacattaaccagaaaa
caaatgaaaaaacttccggaattgctgagcttgaaaaatccagtcatagttcaagacagt
cctgatcgtagcaatatttttttagaaaaagtcgtcaaaattaaaagtacagattcaatg
gaaatttatgaagatatttttaaaaaggaatgtgaaagtcttcatagatccccaactaca
tacccaattacattaatgtttatgcccctatattacattagtatatctgcagcttatctt
aagcacctgtttgggacagttgacattacaacctccagctatgcagtactatattcaagg
caagacaagactgttatacaaactaccattgaagaccttagatcagaaaagccacgaata
agacttgtgcttacatcttctgttgctggtatgggatttgatcccccaagtgttgaaagg
gtaattcatgctagaccccctcggaatatgtcccagtatctacaggaaataggcagagca
ggtagaagaggtcagaaaagtaaagcaattctttattataacaatagagatgtagcaaag
aacattccaggaattcaggaagatatacttgagtattgcaaaaataacaataaatgtctt
cgtgaaatgcttcttgcgccatttggtttcacaaagtcagacaagaaagagagttgttgt
tctttctgttctgggaaaaactggtcacaaatcacaaaacccgtccttgatgaagctgga
aatggaagtgatcttggtattgtgtcagagctgaaaaacaatccaatcattaaagtgact
ggagataatttggatatttatgttagaactgatcacaaatcattagataaacacaaaaaa
gatcttcacttgtttgcatcgaacataatcttcagcagaattgcccaaccacatatgtac
agtcttcgtgaaaacagtattcctctatcaaatctaacttcagatttattcctgccacat
ggacactacactgaaacacttatgagcagctaa
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