Pararhodospirillum photometricum: RSPPHO_00013
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Entry
RSPPHO_00013 CDS
T01851
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSPPHO_00013 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpm03021
]
RSPPHO_00013 (rpoB)
03400 DNA repair and recombination proteins [BR:
rpm03400
]
RSPPHO_00013 (rpoB)
Enzymes [BR:
rpm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSPPHO_00013 (rpoB)
Transcription machinery [BR:
rpm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSPPHO_00013 (rpoB)
DNA repair and recombination proteins [BR:
rpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSPPHO_00013 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CCG06639
UniProt:
H6SIL2
LinkDB
All DBs
Position
complement(77518..79569)
Genome browser
AA seq
683 aa
AA seq
DB search
MTMSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPQDVRTDTGLQEVFKSV
FPIKDFSGKGELEFVSYELEEPKYDVDECQQRGMTFAAPLKVTLRLVVWDVDEETGSRSI
RDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA
RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPATTLLYALEGKISEMLRAERAAEGRSVDP
AELPGMTAEEILDFFYEKLTFNRDEKGWKVAFTADRLRGVKLVHDLIDARTGEIKLEAGT
KVTARAARKLAEDGMTEMRVFTEELVGRYAAEDMINEDTGEIYAEAGDELTEAMLSEMEK
AGFTELRVLHIDHVNVGPYIRNTLMVDKNTSREEALIDIYRVMRPGEPPTLETAEALFRG
LFFDAERYDLSAVGRVKMNARLGFTMQEVPDTARVLRKDDILHILRVLVELKDGRGEIDD
IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVRE
FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP
EGPNIGLINSLATYARVNQYGFIEAPYRKVEDGQVTDEVVYMSAMEEGRYIVAQANRPAD
SRRPVRRRLGVLPQGRRLRDGGP
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgtcgttgaccagtcggaagcgcattcggaaggacttcggccggattccgacc
gtggctcccatgcccaacctgatcgaggttcaaaaaagctcctatgaccagttcctgcaa
atcggggtgccgcaagacgtccgcaccgataccggcttgcaggaagtcttcaagtccgtc
ttccccatcaaggacttttccggcaagggcgaactggagttcgtgtcctatgagctagaa
gagccgaagtatgacgtggacgagtgccagcagcgcggcatgaccttcgccgcccccctc
aaggtgaccttgcgccttgtggtgtgggacgtggatgaggagaccggctcgcgctcgatt
cgcgacatcaaggagcaggacgtctatatgggcgacatgccgctcatgacgtccaacggc
acctttatcatcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgctcgcccggc
gtgttcttcgaccacgacaagggtaagacccactcctcgggcaagtacctgttcgcggcc
cgggtgatcccctatcgcgggtcgtggctggatttcgagttcgacgccaaggacctcgtc
tacgtgcgcatcgaccgccggcgcaagctgccggcgaccaccttgctctatgccctggaa
ggcaagatcagcgagatgctgcgcgccgagcgggccgccgaggggcgctcggtggatccg
gccgaactgcccggcatgaccgccgaggaaatcctcgacttcttctatgagaagctgacc
ttcaaccgcgacgaaaaaggctggaaggtcgccttcaccgccgatcgcctgcgcggcgtc
aagctggtgcacgacctgatcgacgcccgcaccggcgagatcaagctcgaagccggcacc
aaggtcacggcgcgcgccgcgcgcaagctggccgaggacggcatgaccgagatgcgcgtg
ttcaccgaggaactggtgggccgctatgccgccgaggatatgatcaacgaggacacgggc
gagatctacgccgaggccggcgacgaactcaccgaggccatgctctccgagatggaaaag
gccggcttcaccgagctgcgcgtcttgcacatcgaccatgtcaacgtcggcccctacatc
cgtaataccctgatggtggacaagaacaccagtcgggaagaggcgctgatcgacatctat
cgcgtgatgcgtccgggcgagccgccgaccctggagaccgccgaggccttgttccgcggc
ctgttcttcgacgccgagcgctatgacctgtcggccgtcggccgcgtgaagatgaacgcc
cgcctgggcttcaccatgcaggaggtgcccgacaccgcccgcgtgctgcgcaaggacgac
atcttgcacatcctgcgggtgctggtcgaactgaaggacgggcgcggcgaaatcgacgat
atcgaccacctgggcaaccgccgggtgcgctcggtcggcgaactgatggaaaaccagtac
cgggtcggcctgctgcgcatggagcgcgcgattcgcgagcgcatgagcagcgtggatatc
gacacggtcatgccccatgacctgattaacgccaagccggcggcggcggcggtgcgcgag
ttcttcggctcgtcccagctttcccagttcatggaccagaccaacccgctctccgaaatc
acccacaagcgccgcctgtcggccctgggcccgggcggtctgacccgcgaacgcgccggc
ttcgaggtgcgcgacgtgcacccgacccactacggccgcatctgcccgattgagacgccg
gaaggcccgaacatcggtctgatcaactcgctcgccacctacgcccgcgtcaaccagtac
ggcttcatcgaggcgccctatcgcaaggtggaggacggccaggtgacggacgaggtcgtc
tacatgtcggcgatggaggaaggccgctacatcgtggcccaggccaaccgccccgctgac
tcccgaaggccggttcgtcgaagacttggtgtcctgccgcaaggccggcgactacgagat
ggtggcccctaa
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