Roseibium porphyridii: K1718_13500
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Entry
K1718_13500 CDS
T09906
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpop
Roseibium porphyridii
Pathway
rpop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K1718_13500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpop03021
]
K1718_13500 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpop03400
]
K1718_13500 (rpoC)
Enzymes [BR:
rpop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K1718_13500 (rpoC)
Transcription machinery [BR:
rpop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K1718_13500 (rpoC)
DNA repair and recombination proteins [BR:
rpop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K1718_13500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WFE92331
UniProt:
A0ABY8FAT3
LinkDB
All DBs
Position
2887002..2891201
Genome browser
AA seq
1399 aa
AA seq
DB search
MNHEVMNLFNQQAPTQTFDNIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFENYVVLEPGLTPLKQHQLLSEEDFIAAQDEYGEDAFTA
MIGAEAIREILMSMDLERESEKLRQEIAEATTELKPKKLAKRLKVIEAFMESGNRPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILHPANGGPIIVPSQDIVLGLYYLSIMAEGEPGEGMAFGDIGEIHHALA
NNVITLHSKIKGRFKSIDAEGNPTSEIFETTPGRMLVAELLPKHHEVPFDACNKLMTKKD
ISKMIDTVYRACGQKETVIFCDRIMELGFKNACNAGISFGMDDMVIPDTKQKLVAETSSL
ATEYEQQYNDGLITQGEKYNKVVDAWAKCTDKIADEMMARIKAVQIDEESGRQEPMNSVY
MMSHSGARGSPQQMKQLAGMRGLMAKPDGSIIENPIISNFKEGLSVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIILEQDCGSERGITVAPIVDAGNVIASLGMRVLGRT
TAEDVVNNQTGEVLVAKGSLIDEKDVEAIEAAKVQQVKIRSVLTCETETGVCATCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNVDGTIKIRNRS
VNRDSDGNLIAMVRNMSIVVIDSDDNERAVHRVAYGSKLHVDDGDKVKRGQRIAEWDPYT
RPMLAEVDGVVDFEDLVDGASVQETADEATGITKRVVIDWRSSQRGADLKPAIVIKDDKG
AVSKTDRGSDARLMLSVDAVLSVQPGATVKAGDVLARIPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRIIIEPAEEGVDPVEYLIPKGKHFHLQEGDAIE
KGEYILDGNPAPHDILAVKGVEALAAYLVNEIQEVYRLQGVTINDKHIEVIVRQMLQKIE
ITDAGDTEFFSGEQVDKLDFEEANRKAIDEAREPAKGAPVLLGITKASLQTRSFFSAASF
QETTRVLTDAAVNGKTDPLVGLKENVIVGRLIPAGTGGVMKRIRKIATHRDDLIQEAQRQ
QSSDSAAEGLLEDMTGAAE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgaggtcatgaacctgtttaatcagcaggctcccacacagacctttgacaat
atccggatttcgctcgcgagcccggaaaagatcttgtcttggtccttcggcgaaatcaaa
aagccggagacgatcaactaccgcacgttcaagcctgagcgcgacggtctgttctgtgcg
cgtatttttggcccgatcaaagactacgaatgtctttgcggcaaatataagcgcatgaaa
tacaaaggcgttatctgtgagaaatgtggtgttgaagtcaccctttcccgcgttcgccgt
gagcgtatgggccacattgaactggctgcgccggttgcgcatatctggttcctgaagtcg
ttgccaagccgcatcggtcttctgctggacatgacgctgaaggatctggagcgcgttctc
tatttcgagaactacgttgttctggagccgggcctgacaccgctcaagcaacatcagctg
ctgtctgaagaagacttcattgccgctcaggacgagtatggcgaagacgccttcacggca
atgatcggtgctgaagcgatccgcgagatcctgatgagcatggatctggaacgcgagagc
gagaagcttcgtcaggaaatcgcggaagcgacgaccgaactgaagccgaaaaaactggcc
aagcgtttgaaggtcattgaagcattcatggagtcgggcaaccgcccggagtggatgatc
atgactgttgttccggtgatcccgccggatctgcggccgcttgtgccgctggacggcggc
cggtttgcgacgtctgatctcaacgatctgtatcgtcgtgtgatcaaccgtaacaaccgt
ctgcgccggctgatggaactgcgtgcaccggatatcatcatccggaacgaaaagcggatg
cttcaggaatctgtagatgccctgttcgacaacggccgtcgtggccgtgtgatcactggt
gccaacaagcgtcctttgaagtcgctgtccgacatgctgaaaggcaagcagggccgcttc
cgtcagaacctgcttggtaagcgcgtcgactattccggtcgttcggtcatcaccgttggt
cccgaactgaagctgcatcaatgtggtctgccgaagaagatggcgcttgagctcttcaag
ccgtttatctattcgcgcctcgatgcaaagggcttctcctcaacggtcaagcaagccaag
aagctggttgagaaggagcgtccggaagtctgggacattcttgacgaggtcattcgtgag
cacccggttcttctgaaccgcgcaccaacgttgcaccgtcttggcatccaggccttcgaa
ccgacgctgattgaaggcaaggcgatccagttgcacccgctggtgtgttccgcgttcaac
gccgacttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagctcagctg
gaagcccggacgctgatgatgtccacgaacaacattctgcacccggcaaacggtggcccg
atcatcgtgccgtcgcaggatattgttctgggtctctactatctgtcgatcatggcagaa
ggtgagccgggcgaaggcatggccttcggcgatatcggcgagatccatcacgcgctggcc
aacaatgtcatcacattgcattccaagatcaagggacgcttcaagtccattgacgcggaa
ggcaatccgacgtcggagatctttgagacgacgcctggccggatgctggttgcggagttg
ctgccgaaacaccacgaagtgccgttcgatgcctgtaacaagctgatgaccaagaaggac
atctccaagatgatcgacacggtttaccgtgcgtgcggtcagaaggagacggttatcttc
tgtgaccgcatcatggagcttggcttcaagaacgcttgtaacgccggcatttccttcggc
atggacgacatggtcatcccggacaccaagcagaagctggtggccgagacctcatcgctc
gcgaccgaatatgagcagcagtacaatgacggcctgatcactcagggcgagaagtacaac
aaggttgttgacgcctgggcgaaatgcaccgacaagattgccgatgaaatgatggcccgt
attaaggccgttcagatcgatgaggaatctggtcgccaggaaccgatgaattcggtttac
atgatgtcgcactccggtgcgcgtggttcgcctcagcagatgaaacagctggccggcatg
cgtggtctcatggccaagccggacggctccatcatcgaaaacccgatcatctcgaacttc
aaggaaggcttgtcggttctggagtacttcaactccacccacggtgcccgtaagggtctt
gccgacacggccttgaagactgcgaactccggttacctgacacgtcgtctcgtggatgtt
gcccaggactccattattcttgaacaggattgtggttctgaacgtggcatcaccgttgcg
ccgatcgtggatgccggtaacgtcatcgcttctctggggatgcgcgtcctcggtcgtaca
acggcagaagacgtggtcaacaaccagactggtgaagttctggtggcgaagggctcgctg
atcgacgaaaaggacgttgaagcgatcgaagctgccaaggtgcagcaggtgaagatccgt
tcggttctgacctgtgaaaccgaaacaggcgtttgcgcgacctgctacggacgtgacctt
gctcgcggtactccagtgaacatgggtgaggcggtcggcgttatcgctgcgcagtccatc
ggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtaccgcacaggtt
gttgacagctcgttcatcgaatccaatgtcgacggcacgatcaagatccggaaccgttcg
gtcaaccgggactctgatggcaacctgattgccatggtgcgcaacatgtccatcgttgtc
attgacagcgatgacaacgaacgcgccgtgcaccgtgtggcttacggttccaagctccat
gtcgatgatggcgacaaggtcaagcgcggtcagcggattgccgaatgggatccgtacacc
cgtccgatgcttgctgaagttgacggtgtcgttgactttgaagatctggtcgatggtgcg
tctgtgcaggaaactgccgacgaggcgaccggtatcaccaagcgtgtcgtcattgactgg
cgttcgtcccagcgtggtgccgacctgaaaccggcaatcgtgatcaaggacgacaagggg
gcggtttccaagaccgaccgcggttccgatgcacggttgatgttgtcggtggatgcggtt
ctgtccgttcagccgggtgcaactgtcaaagctggtgacgttctggcgcgtatcccgctt
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgtgttgctgaactgttcgaa
gcacgccgtccgaaggatcacgctatcatcgctgagatcgatggcacgatccgtttcggt
cgcgactacaagaacaagcgtcgcatcatcatcgagccggctgaagagggtgtcgatccg
gtcgaatacctcattccgaaaggcaagcacttccatctgcaggaaggcgacgccattgaa
aagggtgagtacattttggacggtaacccggcaccccatgacattctggctgttaaaggc
gtggaagcacttgctgcatacctcgtcaatgagatccaggaagtctaccggttgcaaggt
gtgacgatcaacgacaagcacatcgaagtcattgttcgtcagatgcttcagaagatcgag
atcaccgatgccggtgataccgaattcttctctggcgagcaggttgacaagctcgacttc
gaggaagcgaaccgcaaggcaatcgacgaagccagagagcctgccaaaggcgcaccggtg
ttgctcggcatcaccaaggcttcgttgcagacacgttcgttcttctctgccgcctccttc
caggagacgacccgcgtccttacagatgctgcggtcaacggcaaaaccgatccactggtc
ggtctgaaggaaaacgtgattgtgggacgcctcatcccggctggtaccggcggggtaatg
aagcggatccgcaagattgcaacccatcgcgacgacctgatccaggaagcgcaacgccag
cagtcttcggacagcgcagcggaaggcctcctggaagacatgaccggggcggccgagtaa
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integrated database retrieval system
