Rickettsia prowazekii Chernikova: M9W_03210
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Entry
M9W_03210 CDS
T01789
Name
(GenBank) ATP-dependent RNA helicase RHLE (rhlE)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpw
Rickettsia prowazekii Chernikova
Pathway
rpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9W_03210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpw03019
]
M9W_03210
03009 Ribosome biogenesis [BR:
rpw03009
]
M9W_03210
Enzymes [BR:
rpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9W_03210
Messenger RNA biogenesis [BR:
rpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9W_03210
Ribosome biogenesis [BR:
rpw03009
]
Prokaryotic type
rRNA helicases
M9W_03210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
P-loop_SecA
CMS1
AAA_22
UvrD-helicase
DUF3419
Motif
Other DBs
NCBI-ProteinID:
AFE49467
LinkDB
All DBs
Position
complement(826826..828049)
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AA seq
407 aa
AA seq
DB search
MKNFNLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLIDA
FIKNKTTALILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQLKKNPKVII
GTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATM
PKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQLGNRVGSVIIF
VKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVATDVAARGLDI
PHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDRLVNKGESTP
RSAFRSDKKKRKRSFGKRTSICDSKKFNSFDSSGRRTFDCNRYRSTI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaattttaatttatctaaagaattaattattgctcttgagacaatgaatataact
gagccaactgaaatacagaagcaatctattccagttgcaatgtctggggcagatatactt
gcttctagccaaacagggtcaggaaaaacccttgcttatttattacctttaattgatgca
tttattaaaaacaaaactactgctttaattctcgtgccgactagagaattagcaacgcaa
atacacagtactttaaataaagtaactacagcctataaaatgaatagtgcagttttaata
ggtggtgaacctatgtttaaacaatttatgcaattaaaaaaaaatccgaaagttattatc
ggtacaccagggcgtattatcgagcacttaaatagaagaagtttaaaaattgagcatata
ggtataatagtgctggatgaaatggatagaatgcttgatatgggcatgaaagaacagcta
gaagaaattaataaatttttgccagaaaaaagacaagttttaatgttttctgcgactatg
ccaaaacatattattgctgtttctcaaaaatatttaaacaatccagtacgtattatggta
ggcgcaactaataaagcagcagcagaaataaaacaagaattaatgcatgtttctaataaa
gaaaaatttagtgaattaactaagcaacttggtaatagagtaggatcggtaattattttt
gtgaagactaaacgctctgcagatcaattggctaaaatgttaaaatatgaaaatcataaa
gcagaagctatacatggtgatttaagtcagagtcaacgtgaaagagtaattttatcattt
cgtaagttaaatcatagaataatggtagcaactgatgtagcagcacgtggacttgatatt
cctcatacacagcatgttattaattatgatttacctatgtgtcctgaagattatttacat
aggataggtagaactggtagagcaggtgctatcggacatgcactgtcttttatttctcct
gatgatgttgttagatggcgtgcaattgatcgtttagtaaataaaggtgaatctacacca
cgtagtgcgttcagaagtgataaaaaaaaacgtaaaagatcatttggtaaaagaactagc
atttgtgacagtaagaagtttaattcttttgatagtagtggtagaagaacttttgactgt
aacaggtatcgtagtacgatttga
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