Rubrobacter radiotolerans: RradSPS_1950
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Entry
RradSPS_1950 CDS
T03080
Name
(GenBank) rpoB: DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rrd
Rubrobacter radiotolerans
Pathway
rrd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RradSPS_1950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrd03021
]
RradSPS_1950
03400 DNA repair and recombination proteins [BR:
rrd03400
]
RradSPS_1950
Enzymes [BR:
rrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RradSPS_1950
Transcription machinery [BR:
rrd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RradSPS_1950
DNA repair and recombination proteins [BR:
rrd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RradSPS_1950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Cac1_C
Motif
Other DBs
NCBI-ProteinID:
AHY47233
UniProt:
A0A023X4F8
LinkDB
All DBs
Position
complement(2031430..2034810)
Genome browser
AA seq
1126 aa
AA seq
DB search
MVAPVVRRKRHSYSRVQTADFQLPDLVEIQKQSFEKFLDEGITRTLREISPINDYTNSYA
VEFGEHHFEEPKDSVEECMSKDKTYAASLSVRVRVHIKETGEIREGDVFMGDFPLMTESG
TFIINGTERVVVTQLVRSPGAYVMEPKDATKQVLTASLMPARGSWLEFEVETKGYVSVRI
DRKRKLPVTVLLKALDMGGPSELMERFEDSWLIRNTLERDDTTSREDALLEVFRRQRPGE
PVNVDNAENLIETLFFDPKRYDLSAVGRYKVNKKLKVDVPEDQLTLTVEDIEALLKRLIR
VAEKMAEGEEDFGRISYERYRVDLDEYEHFGNRRLRTVGELIQESFRIGMYRMERVVRER
MTSQDEDAMTAQTVINTKPVQSAVKEFFGSSQLSQFMDQTNTLSGLSHRRRLSAMGAGGL
SRERAPIEVRDVHPTHYGRMCPIETPEGPNIGLIGQLSTFAAVDDFGFLQTPYRRVEDGK
VTDEIVYLSADEEEEHIIAQANTPIDPQTGEITEEQVLARERGGDVSTVERTAVDYMDVA
PLQVVSVGTALIPFLEHDDANRALMGANMQRQAVPLLRSEAPYVGTGMEFRAATDTGDVV
IAQNAGTVERVSAEEIQVRLEDDSLDTYKLRKFGRSNQGTLVNQRPLVREGETVEAGTIM
ADGSSTEEGELALGKNLLVAFMPWEGFNFEDAIIISERLVKDDVLSSIHIEEYEVQARDT
KLGPEEITRDIPNASDEVLMNLDSEGIIRIGAEVNSGDVLVGKVTPKGESEPTPEEKLLR
AIFGEKAREVKDSSLKVPHGEGGVVIDVKKFNREDGDELQPGVNEQVRVFVAKKRKISEG
DKLAGRHGNKGVISKIVPEEDMPYMADGRPVDVILSPLGVPSRMNIGQILETHLGFAASR
GLGENGGEPVHVATPVFSGAEVKDIDQAIEKVRTEVAPEIGMGKGGKVTLYDGRTGEPFD
GRITVGYMYILKLLHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG
AAHTLQELLTIKSDDRVGRVKSYESIVKGENIPEPGVPASFKVLLKEMQSLGLSVKPIYD
AAAAVEGDSERRDWDEAARALGINLSREEPTGNLDDTPDRFSEGGM
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
ttggtagcccctgtcgtgcgccgcaagcggcactcttattcccgtgttcagaccgcagat
ttccagttgccggacctcgttgagatacagaagcagtcctttgagaagttcctcgatgag
gggataacgaggacgctcagggagatctccccgataaacgattacacgaactcgtacgcc
gtcgagttcggcgagcaccacttcgaggagccgaaggactcggtagaggagtgcatgtcg
aaggacaagacgtacgctgcctcgctctcggtgcgcgtgcgggtgcacataaaggagacg
ggggagatccgcgagggcgacgtctttatgggggacttcccgcttatgacggagtccggg
acgttcatcataaacggcacggagcgggtcgttgttacgcagctcgtgcgctctccgggg
gcgtacgtgatggagccgaaggatgcgacgaagcaggtgctcacggcgagcctgatgcct
gcgcgcgggtcgtggctggagttcgaggtcgagacgaagggctacgtctcggtgaggatc
gaccgtaagcgcaagctgcccgttacggtgcttctgaaggcgctcgacatgggcggtccg
tcggagcttatggagcgctttgaggactcgtggcttataaggaacacgcttgagcgggac
gatacgacctcgcgcgaggacgcgcttcttgaggtgttccgcaggcagcgtcccggcgag
ccggtgaacgtggacaacgccgagaaccttatagagacgctcttcttcgacccgaagcgc
tacgacctttcggcggtcgggcgctacaaggtgaacaagaagctcaaggtcgatgtaccc
gaggaccagctcacgctcacggtcgaggacatcgaggcactcctcaagcggctcataagg
gtcgccgagaagatggccgagggagaggaagacttcgggcgcatctcctacgagcgctac
cgggtggaccttgacgagtacgagcacttcggcaaccgcaggctaaggacggtcggggag
cttatccaggagtcgttcaggatcgggatgtaccgcatggagcgggttgtccgggagcgg
atgacctcgcaggacgaggacgcgatgacggcccagacggtcatcaacaccaagcccgtc
cagtcggcggtcaaggagttcttcggctcctcgcagctctcgcagttcatggaccagacg
aacaccctctcggggctctcgcacaggcggaggctctcggcgatgggtgcgggaggtctg
agccgggagcgggcccccatagaggtgcgcgacgtgcacccgacgcactacgggaggatg
tgcccgatcgagacccccgagggaccgaacatcgggcttatcgggcagctctcgacgttt
gcggcggtggatgacttcgggtttcttcagaccccgtaccgccgggtcgaggacgggaag
gttacggacgagatcgtctacctctccgcagatgaggaagaagagcacatcatcgcgcag
gcgaacaccccgatagacccgcagacgggtgagatcaccgaggagcaggtccttgcgcgc
gagcggggcggagacgtctcgaccgtggagaggacggcggtcgactacatggacgtcgcg
ccgcttcaggtcgtttcggtcgggacggcgcttatcccgttccttgagcacgacgacgcg
aaccgcgcgctgatgggcgcgaacatgcagcgtcaggccgtgccgcttctcaggagcgag
gccccgtacgtcgggaccggcatggagtttcgggccgcgaccgacacgggcgacgtcgtt
atcgcccagaacgccggaacggtcgagagggtgtcggccgaggagatccaggttcgcctg
gaggacgactcgctcgacacgtacaagctccggaagttcggccgctccaaccagggcacg
ctcgtgaaccagcgtccgcttgtccgggagggagagacggtcgaggccgggacgatcatg
gccgacggctcctctaccgaggagggcgagctcgccctcggcaagaacctgctcgtggcg
ttcatgccgtgggaggggttcaacttcgaggacgcgatcatcatctccgagcggctcgtc
aaggacgacgtgctctcctccatacacatcgaggagtacgaggtccaggccagggacacg
aagctcgggccggaggagatcacccgcgacatcccgaacgcctcggacgaggtccttatg
aacctcgactcggaggggatcatccgcatcggcgcggaggtcaactcgggcgacgtgctc
gtcggaaaggtaacgccgaagggcgagagcgagccgacgccggaggagaagctcctgcgg
gcgatcttcggtgagaaggcgcgcgaggtgaaggactcttcgctcaaggtcccgcacggc
gagggcggcgtcgttatagacgtaaagaagttcaaccgcgaggacggtgacgagcttcag
cccggcgtcaacgagcaggtccgcgtgttcgtggcgaagaagcggaagatcagcgagggc
gacaagctcgccggacgccacggcaacaagggcgtcatctccaagatcgtccccgaagag
gacatgccgtacatggccgacggtcggccggtggacgtgatcctctcgcctcttggcgtc
ccgagccgcatgaacatcgggcagatccttgagacgcacctcgggttcgcggcgagccgc
ggcctcggggagaacggcggcgagccggtgcacgtggcgacgccggtcttctcgggggcc
gaggtcaaggacatagatcaggcgatagagaaggtcaggaccgaggtcgcgccggagatc
gggatgggcaagggcggcaaggtaacgctctacgacgggcggaccggcgagcccttcgac
gggcggataaccgtcggctacatgtacatcctgaagctcctgcacctcgtggacgacaag
atccacgcccgctcgacgggaccgtactcgctcgttacgcagcagcctctgggcggcaag
gcccagttcggcgggcagcgcttcggcgagatggaggtgtgggcgctcgaagcctacggc
gcggcgcacaccttgcaggagcttttgacgatcaagtccgacgaccgcgtcgggcgggtc
aagagctacgagtcgatagtgaagggcgagaacatccccgagccgggcgtgcccgcgagc
ttcaaggtgctcctcaaggagatgcagtcgctcgggctctcggtcaagccgatttacgac
gccgcggcggcggtcgagggagactccgagcggcgcgactgggacgaggccgcccgggcc
ctcgggatcaacctcagccgcgaggagccgacgggcaacctcgacgatacaccggaccgc
ttctccgaaggaggaatgtaa
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