Rhodospirillum rubrum F11: F11_13840
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Entry
F11_13840 CDS
T02006
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rrf
Rhodospirillum rubrum F11
Pathway
rrf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F11_13840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrf03021
]
F11_13840 (rpoB)
03400 DNA repair and recombination proteins [BR:
rrf03400
]
F11_13840 (rpoB)
Enzymes [BR:
rrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F11_13840 (rpoB)
Transcription machinery [BR:
rrf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F11_13840 (rpoB)
DNA repair and recombination proteins [BR:
rrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F11_13840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEO49230
LinkDB
All DBs
Position
complement(3117310..3121491)
Genome browser
AA seq
1393 aa
AA seq
DB search
MTKSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTDSGLQEVFKSV
FPIRDFSGKGELEFVAYEVEEPKYDTDECQQRGMTFAAPLKVTLRLLVWDVDEETGARSI
RDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAA
RVIPYRGSWLDFEFDAKDMVYVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDP
SEIAGMTSEEILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGT
KVTPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEELTEAMLADMEK
AGFTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIYRVMRPGEPPTLETADALFKG
LFFDSERYDLSAVGRVKMNARLGFTMQEAPDTMRVLRKEDVLHIIRQLVELKDGKGEIDD
IDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVRE
FFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP
EGPNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKYVIAQANAALT
EDGHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVAAALIPFLENDDANRALMGSN
MQRQAVPLVKAEAPYVGTGMEAAVARDSGATIAAKRAGVVQQVDATRIVIRATEDLKIAE
SGVDIYRLQKFQRSNQSTCINQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAFM
PWNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNL
DEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRIPPGVT
GTVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERAILEGSFARRLKELLIGQKVV
GGPRGMATGGVISEDLLSGYTAAQWRQIAVENDETATEIEGLKKAYEESIAKIQERFENK
VEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDGT
YVDIVLNPLGVPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDDV
YGPRHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKAGLDSSGQVT
LSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMR
SLGLDVELGQSSF
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtcgttgaccagtcggaagcgcattcgtaaggacttcggccggattccgacc
gtggcccccatgccgaacctgatcgaggtgcagaaaagctcctatgatcagttcctgcaa
atcggcgttccggtggataaacgcaccgacagcggcctccaggaggtcttcaagtcggtt
ttcccgatccgcgacttttcgggcaagggcgaactcgagttcgtggcctacgaggttgaa
gagccgaaatacgacaccgatgaatgccagcagcggggcatgaccttcgccgcgccgctc
aaggtgaccttgcgcctgctggtctgggacgtcgacgaggaaaccggcgcccgctcgatc
cgcgacatcaaggagcaggacgtctatatgggcgatatgcccctgatgacgtcgaacggc
accttcatcatcaacggcaccgagcgcgtcatcgtctcccagatgcaccgctcgccgggc
gtcttcttcgaccacgacaagggcaagacccattcgtcgggcaaattcctgttcgccgcc
cgggtcattccctatcgcgggtcgtggctggatttcgagttcgacgccaaggacatggtc
tatgtgcgcatcgaccgtcgccgcaagttgccggtgacgacgctgctctatgccctggaa
ggcgccgccgccaccgccttgcgcgaggcgcgcaccgccgagggccgttcggtcgatccg
tccgagatcgccggcatgacctcggaggaaatccttgatttcttctatcagaagctcagc
tacaagcgcgacgacaagggctggaaggtcgacttcaagcccgatcatctgcgcggcgtg
aagctgatgttcgatctggtcgacgccgccaccggcgaggtcaagatcgaggccggcacc
aaggtcaccccccgggcggcgcgcaagctcgccgaggacggcatgaccgagatgcgcgtc
ttcaccgaggagctggtcggccgctacgccgccgaggacatgatcaacgaggccagcggc
gagatctatgccgaggccggcgaggaactgaccgaggcgatgctggccgacatggagaag
gccggcttcaccgagctgcgcgtgcttcatatcgaccatgtcaacgtcggtccctatgtg
cgcaacaccctggcgatggacaagaacaccacccgcgaggaagcgctgatcgatatctac
cgggtgatgcgcccgggcgagccgccgacgctcgagaccgccgacgccctgttcaagggc
ctgttcttcgattccgagcgctatgacctgtcggccgtcggccgggtgaagatgaacgcc
cgcctgggcttcaccatgcaggaagcccccgacaccatgcgggtgctgcgcaaggaagac
gtgctgcacatcatccgccagcttgtcgagctcaaggacggcaagggcgagatcgacgac
atcgatcacctgggcaaccgtcgtgtgcgctcggtcggcgaactgatggaaaaccagtac
cgcgtcggcctgctgcgcatggagcgcgccatccgcgagcgcatgagcagtgtggacatc
gataccgtgatgccccacgacctgatcaacgccaagccggccgccgccgcggtgcgcgag
ttcttcggatcctcgcagctctcgcagttcatggaccagaccaacccgctgtcggaaatc
acccacaagcgccgcctgtcggcgcttggccccggtggtctgacccgcgagcgcgccggc
ttcgaagtgcgcgacgtccatcccacccattacggccgcatctgcccgatcgaaaccccc
gaagggccgaacatcggtctgatcaacagcctggcgaccttcgcccgggtcaatcagtac
ggtttcatcgaaagcccctaccgcaaggtggtcgagggcacggtgaccgacgaggtgacc
tatatgtcggcgatggaagagggcaaatacgttattgcccaggccaacgccgccctgacc
gaagacggccatttcgccgatgacctgatctcgtgccgcaaggccagcgacttcgagatg
gtgcagccccaggacatcgactacatcgacgtgtcgcccaagcagttggtctcggtcgcc
gcggcgctgatccccttcctcgagaacgacgacgccaaccgcgccctgatgggctcgaac
atgcagcgtcaggccgttcccctggtcaaggccgaggcgccttacgtcggcaccggcatg
gaggccgccgtcgcccgcgattcgggggcgaccatcgccgccaagcgcgccggcgtcgtg
cagcaggttgacgccacccgtattgttatccgggcgaccgaagacctgaagatcgccgaa
tcgggcgttgatatctatcgtctgcagaagttccagcgctccaaccagagcacctgcatc
aaccagcgtccgctggtgaaggtgggcgatctggtcggtcgcggcgagatcctggccgac
ggtccgttgaccgagatgggcgagctggcccttggccggaacgtcctcgtcgccttcatg
ccgtggaatggttacaacttcgaagactcgatcctgatctccgagcgcatcgtcagcgac
gacgtgttcacctcgatccatatcgaggagttcgaggtgatggcccgcgacaccaagctg
ggccaggaggaaatcacccgcgacattcccaatgtcggcgaagaggccctgaagaacctc
gacgaggcgggcatcgtctacatcggcgccgaggttcaggccggcgacatcctggtgggc
aaggtcacgcccaagggcgaaagcccgatgaccccggaagagaagctgctgcgcgccatc
ttcggcgaaaaggcgtccgacgttcgcgacacctcgctgcgcattccccccggcgtcacc
ggtacggtggtcgaggtccgcgtcttcaatcgccgcggcgtcgaaaaggacgagcgcgcc
ctggccatcgagcgccaggagatcgaaagcctggccaaggaccgcgatgacgagcgcgcc
atcttggaaggcagcttcgcccgccgcctgaaggaactgctgatcggccagaaggtggtc
ggcggtccgcgcggcatggcgaccggcggcgtgatctccgaggatctgctgagcggctat
accgccgcccagtggcgccagatcgccgtcgagaacgacgagacggcgaccgagatcgag
gggctgaagaaggcctatgaggaatcgatcgccaagatccaggagcgcttcgagaacaag
gtcgagaagctccagcgcggcgatgaactgcccccgggcgttctgaagatggtcaaggtg
ttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaac
aagggcgtgatctccaagatcaatccgatcgaggacatgccctatctggaagacggcacc
tacgtcgatatcgtgctcaatcccttgggcgtgccgtcgcgtatgaacgtcggtcagatc
ctcgagacccatctcggctgggcctgtcgcggtcttggcgcccagatcggcgccctgctc
gaacaggtcaagcgcggcctgatcccgatcaacgatctgcgcgagaagctcgacgacgtg
tacggtccccgtcacgccaaagaggatctggcgccgatgggcgatgaccagatcaaggaa
ctggccttcaacctgcgctcgggcgtgccgattgctaccccggtgttcgacggcgcccgc
gagagcgacatcgtcgacatgctgcgcaaggcgggtcttgactcctcgggtcaggtcacc
ctgtccgatggccggaccggcgagccgttcgaccgcaaggtcacggtgggctatatttat
atgctgaagctccatcacttggtcgacgacaagatccacgcccgttccatcggtccctat
tcgctggtgactcagcagccgttgggcggcaaggcccagttcggcggccagcgcttcggc
gaaatggaagtgtgggcgctggaagcttacggcgcggcctataccctccaggagatgctg
acggtgaagtccgacgacgtgtcgggccgcaccaaggtctatgaggcgatcgtcaagggt
gacgataccttcgaggccggcatccccgagagcttcaacgtgctggtcaaggaaatgcgc
tcccttggtcttgacgttgaattggggcaaagcagcttctaa
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