Roseburia rectibacter: H8S51_002605
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Entry
H8S51_002605 CDS
T09206
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rrk
Roseburia rectibacter
Pathway
rrk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H8S51_002605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrk03021
]
H8S51_002605
03400 DNA repair and recombination proteins [BR:
rrk03400
]
H8S51_002605
Enzymes [BR:
rrk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H8S51_002605
Transcription machinery [BR:
rrk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H8S51_002605
DNA repair and recombination proteins [BR:
rrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H8S51_002605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
UMZ00638
LinkDB
All DBs
Position
543683..547579
Genome browser
AA seq
1298 aa
AA seq
DB search
MEKNRIRPVKAGKGMRMSYSRQKEVLEMPNLIEVQKDSYQWFLKEGLKEVFDDISPIADY
SGHLSLEFVDFTLCESDVKYTIPECKERDATYAAPLKVKVRLHNKETDEINEHEIFMGDL
PLMTETGTFVINGAERVIVSQLVRSPGIYYGIAHDKVGKKLYSCTVIPNRGAWLEYETDS
NDVFYVRVDRTRKVPITVLIRALGIGTNQEIIDLFGEEPKILASFGKDVATNYEEGLLEL
YKKIRPGEPLTVESAESLISAMFFDPRRYDLAKVGRYKFNKKLMLKNRINGQVLAEDVVN
LATGEIIAEAGTEVTRSLADDIQNAAVPYVWIQTETRNVKVLSSMMVDLRTYVDCNPKDL
GITELVYYPVLAQLMEEHTDIDELKEAIKKNVHDLIPKHITKDDIFASINYNMHLEYGIG
NDDDIDHLGNRRIRAVGELLQNQYRIGLSRLERVVRERMTTLDLDGISPQSLINIKPVTA
AVKEFFGYSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCP
IETPEGPNIGLINSLASYARINEYGFVEAPYRKIDKSDPKNPRVTDEVVYMTADEEDNYH
VAQANEALDAEGHFVRNSVSGRYREETQEYEKTMFDYMDVSPKMVFSVATALIPFLQNDD
ANRALMGSNMQRQAVPLLTTDAPVVGTGMETKAAVDSGVCVIAKKSGIVESSESNQIIIK
SDEGTRDVYKLTKFSRSNQSNCYNQRPIVFKGDRVEAGEVIADGPSTSNGELALGKNPLI
GFMTWEGYNYEDAVLLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDVPGVGDDAL
KDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPH
GEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLPV
EDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIETPVFDGAKEIDIQ
DTLELANDYVNMPFDAAEAEKEGKTESFEEKYKDILREDVMKYLSDNRAHRALWKGVPIS
RDGKVQLRDGRTGEPFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQF
GGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGDNIPEPGIPESFKV
LLKELQSLGLDVKVLDEDRNEVELMETSEYGNTDLNSIISGDKDFAFEDSDSFAKMGFSQ
KEFNAENEELVDVDEEPEEDEDDSDFFDDAEENTLDEE
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaacagaatacgaccagtcaaagccggtaaaggcatgcgtatgagttactca
agacagaaagaggtattggaaatgccgaatctgatagaggttcagaaagactcctatcag
tggtttttaaaagaaggcttaaaagaagttttcgacgatatctccccaatcgcagattac
agcggtcacttgagtctggaatttgttgattttacattatgtgaatcagatgtaaaatat
acaattccggagtgcaaagagagagatgcaacttatgcagcacctttaaaggtaaaggta
agacttcacaacaaagaaacagatgagattaatgaacatgagattttcatgggtgatctt
cctttgatgaccgagacaggtactttcgtaatcaacggagccgagcgtgttatcgtcagc
cagttggtacgttctccgggtatctattacggtattgctcacgataaagtgggtaaaaag
ctgtattcctgtaccgtgatcccgaaccgtggtgcatggttagagtatgagacagactcc
aatgacgtattctatgttcgtgttgatagaacgagaaaggtgccgatcacagtattgatc
cgtgcacttggtatcggaaccaatcaggaaatcatcgatctgtttggtgaggaaccgaag
attcttgcaagttttggaaaagacgttgcaacaaattatgaggaaggtcttcttgagtta
tataagaaaatcagaccaggcgagccgcttacagttgaaagtgcggagagccttatttct
gctatgttctttgatccgcgaagatatgatcttgcaaaagtaggccgttacaaatttaat
aagaaacttatgttaaagaaccgtatcaacggacaggttctcgcagaggatgttgtaaat
cttgcaactggtgagatcattgcagaggctggtacggaagtgacaagaagtcttgcagat
gatatccagaatgcagctgttccatatgtatggattcagacagagactagaaatgtcaaa
gttctttcttccatgatggttgatttaagaacatatgtggactgcaatccaaaagacctt
ggtatcaccgagctggtgtactatccggtacttgctcagttgatggaagaacatacagat
attgatgaattaaaagaagcgatcaaaaagaatgtgcatgacctgattccgaagcatatt
acaaaggatgatatttttgcatccattaactacaatatgcacttagagtatggtatcggt
aatgatgatgatatcgatcaccttggaaacagacgtatccgtgcagttggtgagttatta
cagaaccagtatcgtatcggtctttccagattagagagagttgttcgtgagagaatgact
actttagatttagacggtatttctccacagagtctgatcaatatcaaaccggtaacagca
gcggtaaaagagttctttggttattcccagttgtcacagtttatggatcagaacaaccca
ttaggtgagctgacacataagagacgtctttctgcattaggacctggtggtctttccaga
gaccgtgccggattcgaggtacgagatgtacattattcccattacggaagaatgtgcccg
atcgagacacctgagggaccaaacatcggtcttatcaactcactggcaagttatgcaaga
attaacgagtatggtttcgtagaggcaccataccgtaaaatcgataaatcagatcctaag
aatccgcgtgtcacagacgaagtagtttatatgacagcagatgaagaggataattaccat
gtagcgcaggcgaatgaggcactggatgcagaaggacattttgtccgtaattccgtatct
ggtcgttacagagaggaaacacaggagtatgagaagactatgtttgattacatggatgta
tctccgaagatggtattctctgtcgcaacagcacttattccgttcttacagaacgatgat
gcaaaccgtgcgctgatgggatctaacatgcagcgtcaggcagtgccgcttcttaccaca
gatgctccggtagtcggaacaggtatggagacaaaggcagcggttgactccggtgtatgt
gtgatcgcaaagaaatccggtattgtagaaagctctgagtcaaaccagatcatcattaag
agtgatgagggaaccagagatgtatataaactgacaaaattctcaagaagtaaccagtct
aactgctacaaccagagaccgatcgtattcaaaggtgaccgtgtggaagccggagaagtg
atcgcagacggtccgtctacttcaaacggtgagttagcacttggtaaaaacccactgatc
ggattcatgacctgggaaggttacaactacgaggatgccgttctgttaagtgagagactg
gtacaggatgatgtttatacatctatccatatcgaggaatacgaagcagaagcacgtgat
acaaaactcggaccggaagagatcacaagagatgttcctggtgtcggtgatgatgcgtta
aaagatcttgatgagaggggtatcatccgtatcggtgcagaggttcgtgccggtgatatc
ttagtcggaaaagttactccgaagggagagacagaactgactgctgaggagagactgctt
cgtgcgattttcggtgagaaggcaagagaagtacgtgatacttccttaaaggtaccacat
ggtgaatatggtatcgtagttgatgcaaaggtatttacaagagaaaacggtgatgagtta
tctcctggtgtaaatcaggcagtccgcatttatattgcacagaagagaaagatctctgtc
ggtgataagatggctggtcgtcatggtaacaagggtgtcgtttcccgtgtacttcctgtt
gaggatatgccattcctgccaaacggacgtccgcttgatatcgtattaaatcctcttggt
gtgccgtcccgtatgaacattggtcaggtccttgagattcacttaagtcttgctgcaaaa
gcacttggatttaacatcgagacaccggtattcgatggtgcgaaagagattgatatccag
gatacacttgagcttgcaaatgactatgtaaatatgccgtttgatgctgcagaagcagaa
aaagaaggcaaaacagagagctttgaagaaaaatataaagatatattaagagaagacgtt
atgaagtatctttctgacaaccgtgcacaccgtgcactgtggaaaggcgttccgatctcc
cgcgacggaaaggttcagcttcgtgacggacgtaccggagagccgtttgattcaccggtt
accattggacacatgcattatctgaaactccaccatctggtagatgataagatccatgca
cgttctactggtccttactccttagtaacgcagcagccgttaggtggtaaagcacagttc
ggtggtcagcgtttcggagagatggaggtttgggcactggaagcatacggtgcatcctat
accttacaggagatcttaacagtaaaatccgatgatgttgtcggacgtgttaagacttac
gaagcaattattaagggtgataatatccctgaaccgggtatcccagagtctttcaaggtt
ctgttaaaagagcttcagtcacttggtctggatgtcaaagtcttagatgaggacagaaac
gaagtagagctgatggagacaagcgaatacggcaatacagatctgaattccattatttcc
ggagataaggattttgcatttgaggacagtgattcctttgcaaagatgggattctcacag
aaagagttcaatgcggaaaatgaagaactcgtagatgtggatgaggaaccggaggaagat
gaggatgattccgactttttcgacgatgcagaagaaaatactcttgacgaagaataa
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