Rhodococcus rhodochrous: 4535765_01864
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Entry
4535765_01864 CDS
T05521
Symbol
rng
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4535765_01864 (rng)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rrt03019
]
4535765_01864 (rng)
03009 Ribosome biogenesis [BR:
rrt03009
]
4535765_01864 (rng)
Enzymes [BR:
rrt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
4535765_01864 (rng)
Messenger RNA biogenesis [BR:
rrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
4535765_01864 (rng)
Ribosome biogenesis [BR:
rrt03009
]
Prokaryotic type
rRNA processing factors
4535765_01864 (rng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
SNV17437
LinkDB
All DBs
Position
1:2013277..2016585
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AA seq
1102 aa
AA seq
DB search
MADQEPPENNSIEASDAGGRNLLGLPAKIRVHALAKLLGLTSKQVIAKAAERGTELRSAH
STLPRDVAEDLHAALSDDTGTPEPAVQQAGTAPETAEQTAPEVETAPEPVAEKAAESTEA
LPVESDDLRPAEKTADETAPQALDIPSVGGPTGLFTSVEQSTPLFEMPEPSTTAEPIVAA
PLFLQPEVPSPAEEEETRPRRRRARRGKDTEQTPVEDEQQTAEPAAAESTEEAPSQQADE
DQDDQPRRRRRGRRGRGRGRGDGTDTDQQDETTASGEDSESSDAETDKSAAAESTAAETP
AEETAGAEESTSDEAASGDDQSSDEHDSDDEQGGGTSRRRRRRRRRRRRGSSDTDTASTD
DDSVPTVVHEREPRPKSRAKDEVQGISGSTRLEAKRQRRRDGREAGRRRPPILTESEFLA
RREAVDRVMVVRERTGGSHAGMTQVAVLEDGILVEHFVTTSGSASMVGNIYLGRVQNVLP
SMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVVVQVSKDPVGHKGA
RLTTQISLAGRFLVYVPGGSSTGISRKLPDTERKRLKDILREIVPSEAGVIIRTAAEGVS
EEELSRDVTRLQTQWEAIREQSEKLQADASGQPKTLYEEPDLLVKVVRDLFNEDFSKLVI
EGDSAWNTVESYIRTVAPDLLPRVERYRSENSVDVFGAHRIDEQLAKALDRKVWLPSGGT
LVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFID
MVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVEAFSTTCEHCNG
RGLIVHSEPIESKSSDDSGRSSGGGSRRKRGRDKSSQEPAAETHTTPSPEEVVKRAAHPV
ALAMAAHHSTPAADAPAAEPTATETASEAASAPAGDVDPVKVTEPLRAVEPEKVAAPTKE
PVAGEDATTVTTASDEPAEIEAEVAAAESAVADTAVSEAPVAETAVSGAGESADGAASVE
AAEPAPRRRRARRVARAAAAPAGDGGPAAKVFVVPATTGTSTGTEPDSRPSPPVETPVEI
VRRPRSRRAAGRPAGPPVDAEA
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagagccgccggagaacaactcgatcgaagcgtcggacgcagggggacgg
aacctcctcggtctgcctgccaagatccgcgtccatgccctcgccaagttgctggggctg
accagtaagcaggtgattgcgaaggccgccgagcgcggcaccgagctgcgcagtgcgcac
tcgacccttccgcgcgacgtcgcggaggacctgcacgccgcgttgagcgacgacacgggc
acgcccgagcctgccgtgcagcaagccggaactgcgcccgaaactgcagagcagacggct
cccgaggtcgagaccgcccccgagcctgtcgcggagaaggctgcggagagcaccgaggcc
ctgccggtcgagagcgacgacttgcgacccgcagagaagactgcggacgagactgcaccg
caggcactcgacatcccctccgtcggaggacccaccgggctgttcacgtcggtggagcag
agcacgccgctgttcgagatgcccgagccgtccaccacggccgagccgatcgtcgccgca
ccgctgttcctccagcccgaggtaccctcgccggccgaggaggaggagacccgcccgcgt
cgacgtcgcgcacgccgcggcaaggacaccgagcagactccggtcgaggacgagcagcag
accgccgagccggccgccgccgagtccaccgaggaagcgccgtcgcagcaggcggacgag
gaccaggacgaccagccgcgtcgccgccgccgcggacgtcgcggtcgtggacgtggccgc
ggggacggcacggacaccgatcagcaggacgagaccaccgcgagcggcgaggactccgag
tcctccgacgcggagacggacaagtccgctgcagcggagtccaccgccgcggagactcct
gcggaggagaccgccggcgccgaggagagcacctccgacgaggccgcctcgggcgacgat
cagagcagcgacgagcacgattccgacgacgagcagggcggcgggacctcccgtcgccgt
cgccgtcgccgtcgccgtcgccgtcgcggttcctccgacaccgacaccgcgagcaccgac
gacgactcggttcccacggtcgtccacgagcgggagccgcgtcccaagagccgcgccaag
gacgaggtccagggcatcagcggttcgacgcgtctcgaggcgaagcgtcagcgtcggcgc
gacggccgcgaggccggtcgccggcggcccccgatcctcaccgaatccgagttcctcgcc
cgtcgcgaggccgtcgaccgggtcatggtcgtgcgcgaacgcacgggcggttcccacgcg
ggcatgacgcaggttgcggtgctcgaggacggcatcctcgtcgagcacttcgtcacgacc
tccggttcggcgtcgatggtcggcaacatctatctcggccgcgtgcagaacgtccttccg
tccatggaggccgcgttcatcgacatcggccgtggccgcaacggcgtgctctacgccggt
gaggtgaactgggaggccgctggcctcggaggcaactcccgcaagatcgagcaggccctc
aagcccggcgaccaggtggtcgtgcaggtcagcaaggacccggtcggtcacaagggtgcg
cgtctgaccacccagatcagccttgccggacgcttcctggtgtacgtgccgggcggctcg
tccacgggcatcagccgcaagctgcccgacaccgagcgcaaacgcctcaaggacatcctc
cgcgagatcgtcccctccgaggcgggcgtgatcatccgtaccgccgccgagggcgtgagc
gaggaggaactctcgcgcgacgtcacccgcctgcagacgcagtgggaggcgatccgcgag
cagtccgagaagctgcaggccgacgcatcgggacagccgaagacgctctacgaggagccg
gatctgctcgtgaaggtcgtgcgcgacctgttcaacgaggacttctccaagctcgtcatc
gagggcgactcggcgtggaacaccgtcgagagctacatccggacggtcgcacccgacctg
ctgccgcgcgtcgagcgctaccgctcggagaactcggtggacgtcttcggtgcgcaccgc
atcgacgagcagctcgcgaaggctctcgaccgcaaggtgtggctgccgtccggtggcacg
ctcgtcatcgaccgcaccgaggcgatgactgtcatcgacgtcaacaccggcaagttcacc
gggtccggcggcaacctcgaggagacggtcacccgtaacaacctcgaggcggccgaggag
atcgtccgccagatgcgcctgcgcgacatcggcggcatgatcgtcgtcgacttcatcgac
atggtgctcgaatccaaccgcgacctcgtgctgcgtcgcctgaccgaggctctcggccgg
gaccgcacccgccaccaggtctcggaggtcacctcgctcggcctcgtccagatgacgcgc
aagcggctcgggaccggtctcgtcgaggcgttctccaccacctgtgagcactgcaacggc
cgcggcctcatcgtgcactcggagccgatcgagtcgaagtcctcggacgactccggtcgt
tcgtccggcggcggttcgcggcgcaagcgtggacgcgacaagagctcgcaggagcccgcc
gccgagacgcacacgacgccgtcgcccgaagaggtcgtcaagcgtgccgcgcaccccgtc
gcgctcgcgatggccgcgcaccactcgacaccggccgcggacgctccggccgcagagccg
acagcgaccgagaccgcatccgaggcggcgtccgcacctgcgggcgacgtcgacccggtc
aaggtcaccgagccgctgcgggccgtcgagcccgagaaggtcgccgcgccgacgaaggag
cccgtcgcgggggaggacgccaccacggtgacgaccgcctccgacgagcccgccgagatc
gaggcagaggtcgcagcggcggaatccgcggtcgccgacacggccgtgtccgaggctcct
gtggccgagacggccgtctccggagcaggggagagcgccgacggtgcggcttccgtcgag
gccgcagaaccggctccgcgtcgtcgtcgggcacgcagggtcgcccgggcggcggcagcg
cccgccggggacggtgggcctgcagccaaggtgttcgtcgtccccgcgacgaccggcacc
tcgaccggaaccgagccggactcccggccgagcccaccggtcgagacgccggtggagatc
gtgcggcggccgcgttcgcggcgtgccgcagggcgccccgccggacctccggtggacgcc
gaggcgtga
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