Rhodococcus rhodochrous: 4535765_03617
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Entry
4535765_03617 CDS
T05521
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4535765_03617 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rrt03021
]
4535765_03617 (rpoB)
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_03617 (rpoB)
Enzymes [BR:
rrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4535765_03617 (rpoB)
Transcription machinery [BR:
rrt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
4535765_03617 (rpoB)
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
4535765_03617 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
SNV23093
LinkDB
All DBs
Position
1:complement(3922284..3925772)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAVSSQTKAVAGIPGAPTRVSFAKIREPLEVPGLLDLQTDSFEWLIGSERWRAKAAERGD
GHVVGGLEEILDELSPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDMTYAAPLFVTAEF
INNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDKTVDKSTEKDL
HSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSTEQIVERFGFSEIMM
STLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGRYKINKK
LGLNTGQPIEASTLTEEDIVATIEYLVRLHAGENKMTVPGGVEVPVEVDDIDHFGNRRLR
TVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQF
MDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGS
LSVYARVNPFGFIETPYRKVVDGVVTDEVEYLTADEEDRYLIAQANSPIGSDSRFSDERV
LVRKKGAEIEYVAADQVEYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLV
RSESPIVGTGMELRAAVDAGDVIVTEKSGVIEEVSADFITVMADDGTRKTYRLRKFDRSN
QGTCSNQRPIVDEGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSQ
RLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDG
DILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGENGKVIGVRVFSREDDD
DLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNT
HGVPRRMNIGQVLETHLGWVGKAGWQIQVADDGSRPEWAQNLSEEMLAAEPDTNIATPVF
DGAREEELTGLLSSTLPNRDGEVMVGPDGKATLFDGRSGEPFPYPVSVGYMYIIKLHHLV
DDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDVV
GRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIAMADGDDEDLER
AAANLGINLSRNESATVDDLAN
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctctagccagaccaaggcagtagccggaatccccggagccccgacgagggtg
tcgttcgcgaagattcgcgaacccctcgaagttcccgggctcctcgatctacagaccgat
tccttcgaatggttgatcggctcggagcgctggcgcgcgaaggctgccgagcgcggcgac
ggtcacgtcgtcggtggcctggaggagatcctcgacgagctctcgccgatcgaggacttc
tcgggttcgatgtccctgtccttctccgatcctcgtttcgacgaggtcaaggcctccgtc
gaggagtgcaaggacaaggacatgacgtacgcggctccgctgttcgtcactgccgagttc
atcaacaacaacaccggcgagatcaagagccagacggtcttcatgggtgacttcccgatg
atgaccgacaagggcaccttcatcatcaacggcaccgagcgtgtcgtggtgtcccagctc
gtccgttcgccgggcgtgtacttcgacaagaccgtcgacaagagcaccgagaaggacctg
cacagcgtcaaggtcatcccgggccgcggtgcctggctcgagttcgacgtcgacaagcgc
gacaccgtcggtgtgcgtatcgaccgcaagcgccgccagccggtcaccgtgctgctcaag
gcgctgggatggtccaccgagcagatcgtcgagcgtttcgggttctccgagatcatgatg
tcgacgctcgagaaggacaacacggcgggcaccgacgaggcgctcctcgacatctaccgc
aagctccgtccgggcgagccgccgaccaaggagagcgcgcagaccctgctggagaacctc
ttcttcaaggacaagcgctacgacctggcgcgcgtgggtcgttacaagatcaacaagaag
ctcggcctgaacacgggtcagccgatcgaggcgtccaccctcaccgaggaagacatcgtc
gccacgatcgagtacctcgtgcgtctgcacgcgggcgagaacaagatgaccgtccccggc
ggcgtcgaggttcccgtcgaggtcgacgacatcgaccacttcggcaaccgtcgtctgcgc
acggtcggtgagctcatccagaaccagatccgcgtgggcctgtcccgcatggagcgcgtg
gtccgtgagcgcatgaccacccaggacgtcgaggcgatcacgccgcagaccctgatcaac
atccgtccggtcgtggccgcgatcaaggagttcttcggaacctcccagctgtcgcagttc
atggaccagaacaacccgctgtcgggcctgacgcacaagcgtcgtctgtcggcgctgggc
cccggcggtctgtcgcgtgagcgcgccggcctcgaggtccgcgacgtccacccgtcgcac
tacggccgcatgtgcccgatcgagaccccggaaggcccgaacatcggcctgatcggttcg
ctgtcggtgtacgcgcgggtcaacccgttcggcttcatcgagacgccctaccgcaaggtc
gtcgacggtgtcgtcaccgacgaggtcgagtacctcacggccgacgaggaggaccgctac
ctcatcgcgcaggccaactcgccgatcggctccgacagccgcttctcggacgagcgtgtc
ctcgtccgtaagaagggcgcggagatcgagtacgtcgctgccgaccaggtcgagtacatg
gacgtctcgccgcgccagatggtgtcggtcgcgaccgcgatgatcccgttcctcgagcac
gacgacgccaaccgtgccctcatgggcgcgaacatgcagcgtcaggccgtcccgctggtg
cgcagcgagtcgccgatcgtcggtaccggcatggagctgcgtgccgccgtcgacgccggc
gacgtcatcgtcaccgagaagagcggcgtgatcgaagaggtctccgccgacttcatcacc
gtcatggccgacgacggaacccgcaagacctaccgtctgcgcaagttcgaccgttcgaac
cagggcacctgctcgaaccagcgtccgatcgtggacgagggacagcgcgtcgagtccggc
caggtcctcgccgacggcccctgcaccgagaacggtgagatggcgctcggcaagaacctg
ctcgtggcgatcatgccgtgggagggccacaactacgaggacgcgatcatcctgtcgcag
cgcctcgtggaggaggacgtgctcacctcgatccacatcgaggagcacgagatcgacgcc
cgcgacaccaagctcggtgccgaggagatcacccgcgacatcccgaacgtctccgacgag
gtcctcgccgacctcgacgagcgtggcatcgtccgcatcggtgccgaggtccgcgacggc
gacatcctcgtcggcaaggtcacgccgaagggcgagaccgagctgacccccgaggagcgc
ctgctccgcgcgatcttcggtgagaaggcgcgcgaggtccgcgacacctcgctcaaggtg
ccccacggtgagaacggcaaggtcatcggtgttcgcgtgttctcgcgcgaggacgacgac
gatctgcctccgggcgtcaacgagctcgtccgcgtgtacgtggcgcagaagcgcaagatc
caggacggcgacaagctcgccggccgccacggcaacaagggcgtcatcggcaagatcctc
ccgcaggaggacatgccgttcctgcccgacggcaccccggtcgacatcatcctgaacacc
cacggtgttccgcgtcgtatgaatatcggccaggtcctcgagacgcacctgggctgggtc
ggcaaggccggctggcagatccaggtggccgacgacggcagccgtcccgagtgggcgcag
aacctctccgaggagatgctcgccgccgagcccgacaccaacatcgccacgccggtgttc
gacggtgcccgcgaggaggagctgacgggtctgctgtcctcgacgctgccgaaccgcgac
ggtgaggtcatggtcggccccgacggcaaggcgacgctgttcgacggtcgctccggcgag
ccgttcccgtacccggtgtcggtcggctacatgtacatcatcaagctgcaccacctggtc
gacgacaagatccacgcgcgttcgaccggtccgtactcgatgatcacgcagcagccgctc
ggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggagtgctgggcgatgcag
gcctacggcgccgcctacaccctccaggaactgctcacgatcaagtccgacgacgttgtc
ggtcgcgtcaaggtctacgaggcgatcgtcaagggcgagaacatccccgagccgggtatc
cccgagtcgttcaaggtgctcctcaaggaactccagtcgctgtgcctgaacgtggaggtc
ctctccagcgacggcgcggccatcgcgatggccgacggcgacgacgaggacctcgagcgg
gcggccgccaacctgggcatcaacctttcccgcaacgagtcggccacggtcgacgacctc
gcgaactag
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integrated database retrieval system
