Rhodococcus ruber: CS378_04330
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Entry
CS378_04330 CDS
T05142
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03030
DNA replication
rrz03410
Base excision repair
rrz03420
Nucleotide excision repair
rrz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CS378_04330
03410 Base excision repair
CS378_04330
03420 Nucleotide excision repair
CS378_04330
03440 Homologous recombination
CS378_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrz03032
]
CS378_04330
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_04330
Enzymes [BR:
rrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CS378_04330
DNA replication proteins [BR:
rrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CS378_04330
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CS378_04330
NER (nucleotide excision repair)
GGR (global genome repair) factors
CS378_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ATQ28033
LinkDB
All DBs
Position
complement(971309..974032)
Genome browser
AA seq
907 aa
AA seq
DB search
MTRASTSSAPAASGGDRPTLLLLDGHSLAFRAYYALPAENFKTHSGQTTNAVYGFTSMLI
NLLRDEQPTHVAAAFDVNRDTFRATAYPEYKANRSSAPDEFRGQIDITKDVLGALGIPVM
AEAGFEADDIIATLATQAAAQGYRVLVVTGDRDSLQLVTDDVTVLYPRRGVSDLTRFTPA
AVEEKYGLTPQQYPDFAALRGDPSDNLPSIPGVGEKTAAKWIREFGSLTDLVDRVDEVRG
KTGDALRAHLSSVLLNRQLTEMVRDMTLPYTPDQLALAPWDRDRIHRLFDDLEFKVLRDR
LFATLSSVEPEAEEGFEVRGGVLEPGALTGWLAEHAGPGARHGITVLGSCVPYGGDATAV
AIAAADGEGAYVDTTTLTPEDETALTGWLGDAAVPKALHEAKAALHALRGRGWTLAGVTS
DTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGEQQLSLLDDADAADAKAAESAILQ
ARAVVDLAAALDTELEEIESTALLTDMELPLLGVLADLETTGIAVEAERLEDLQSGFVAD
VAAAASAAYDVIGKQINLGSPKQLQVVLFDELDMPKTKKTKTGYTTDAEALQNLFEQTGH
PFLEHLLAHREAMKMKTTVDGLIKSIADDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRT
EAGRHIRDAFVVGPGYDLLLTADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVGSRAF
GVPIEEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTDEAREQMEAYFNRFGGVRDYL
HAVVEQARKDGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMID
VQTALREAGLRSRMLLQVHDELVLEVTADERERVQQLVRDKMASVIELSVPLDVSVGSGR
SWDAAAH
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtgactcgcgcatcgacctcctccgcacccgccgcctccggcggcgaccgaccgaccctg
ttgctgctcgacgggcattccctggcgttccgcgcgtactacgccctgccggcggagaac
ttcaagacccacagcggccagaccaccaacgcggtgtacgggttcacctccatgctcatc
aacctgctgcgcgacgagcaacccacccacgtcgccgccgcgttcgacgtcaaccgcgac
acgttccgggcgacggcgtaccccgagtacaaggccaaccgcagctccgcgccggacgag
ttccgcggtcagatcgacatcaccaaggacgtgctcggggccctgggtatcccggtgatg
gccgaggccggtttcgaggccgacgacatcatcgccaccctggccacgcaggccgcggcc
cagggatatcgggtgctcgtcgtcaccggcgaccgggactccctgcagctggtcaccgac
gacgtcaccgtcctgtacccccggcgcggagtgtcggacctgacgcggttcacgccggcg
gcggtggaggagaagtacgggctgaccccgcagcagtacccggacttcgcggcgctgcgc
ggggatccgagcgacaacctgccgtcgatcccgggcgtgggggagaagaccgccgccaag
tggatccgcgagttcgggagcctcaccgacctcgtcgaccgcgtcgacgaggtccgaggg
aagaccggcgacgccctgcgggcgcacctgtcgagcgtgctgctcaaccgtcagctcacc
gagatggtgcgggacatgaccctgccctacacccccgaccagctggcgctggctccctgg
gaccgcgaccgcatccaccggttgttcgacgacctcgagttcaaggtgctgcgcgaccgg
ctgttcgcgacgctcagctcggtcgaacccgaggccgaggagggcttcgaggtgcgcggc
ggcgtgctcgagccgggcgcgctcaccgggtggctggccgagcatgccgggccgggtgcg
cggcacgggatcaccgtgctcgggtcctgcgttccgtacggcggtgacgccacggccgtg
gcgatcgccgcggccgacggggagggggcgtacgtggacaccacgaccctcacgcccgag
gacgagacggcgctgaccggctggctgggcgacgcggcggtgcccaaggcgttgcacgag
gcgaaggccgccctgcacgcactgcgaggccgcggctggacgttggccggggtcaccagc
gacaccgccctcgcggcctacctggtacgtcccggtcagcgcagcttcaatctcgacgac
ctgtccctgcgctacctcaagcgggaactgcgggtcgaggagtcgggggagcagcagctc
tcgctgctcgacgacgccgatgccgcggacgcgaaggccgccgagtcggcgattctgcag
gcccgggcggtggtggacctcgccgcggccctggacaccgaactcgaggagatcgagtcc
accgccctgctgaccgacatggaactgcccctgctgggggtgctcgccgacctcgagacg
accggcatcgcggtcgaggccgaacggctggaggacctgcagtccggcttcgtcgcggac
gtcgccgccgccgcgtcggccgcctacgacgtgatcggcaaacagatcaacctcggctca
ccgaagcagctgcaggtggtgctgttcgacgagctggacatgccgaagacgaagaagacc
aagaccggctacaccaccgacgccgaggcgctgcagaacctgttcgagcagaccgggcac
ccgttcctcgagcatctgctcgcccaccgggaagcgatgaagatgaagaccacggtcgac
ggtctgatcaagtccatcgccgacgacggccgcatccacaccaccttcaaccagaccgtg
gcggccaccggccggctctcctcgaccgagccgaatctgcagaacatcccggtgcgcacg
gaggcgggccggcacatccgcgacgcgttcgtcgtcggccccggctacgacctgctgctc
accgcggactacagccagatcgagatgcggatcatggcccacctctccggggacgagggg
ctgatcgaggccttcaacaccggcgaggacctgcacagtttcgtcggctcccgggccttc
ggggtgccgatcgaggaggtcacccccgaactgcggcggcgggtcaaggcgatgtcgtac
ggcttggcgtacgggctcagcgcgtacgggttggcgcagcagctgaagatctccaccgac
gaggcccgcgaacagatggaggcgtacttcaaccgcttcggcggcgtgcgcgactacctg
cacgccgtcgtcgaacaggcccgcaaggacggctacacctccaccctctacggccgccgc
cgctacctgccggacctgaacagcgacaaccggcagcgccgcgaggtcgccgaacgcgcc
gcgctcaacgccccgatccagggcaccgccgccgacatcatcaaggtcgcgatgatcgac
gtgcagacggcgctgcgcgaggccggactgcgttcgcgcatgctcctgcaggtgcacgac
gagctggtgctcgaggtgaccgccgacgagcgcgaacgggtgcagcagctggtgcgggac
aagatggcctcggtcatcgaactgtccgtcccgctggacgtctcggtcgggtccggacgc
agctgggacgccgccgcgcactga
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