Cereibacter sphaeroides 2.4.1: RSP_1484
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Entry
RSP_1484 CDS
T00284
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSP_1484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsp03019
]
RSP_1484
03009 Ribosome biogenesis [BR:
rsp03009
]
RSP_1484
Messenger RNA biogenesis [BR:
rsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSP_1484
Ribosome biogenesis [BR:
rsp03009
]
Prokaryotic type
rRNA helicases
RSP_1484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABA77625
UniProt:
Q3J6F9
LinkDB
All DBs
Position
1:complement(70001..72334)
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AA seq
777 aa
AA seq
DB search
MTQTDIAAPLAAALAAKGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQ
ILQGADRLLFADTPIALAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRAL
DRGAHIVVGTPGRLRDHIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERR
TLMFSATVPKEIEALAKEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRF
YEAPSAIVFCKTRLAVNHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIAT
DVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLT
GAKLVADWGKPPSADEVQERDDARLLEHPVLGQDLSDEMPLAEKLLERFGPAQMSAAFVR
LWREGRSAPEVLQDLAPPEPSQRAPRERGEFGEAVWYAVAVGHTGRAEARWLLPKICEAG
GVTKNEIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKP
FAERAPRARDEAPRREKAPYQPKPSRFVEEDPGEARGGWTPDDRPERAPRPRREDGAPFA
KRDMNDAPRPRRESAAEDEGRKPRRSSDERPARPAAAGRSAGFKSHGGTASRSAGYKSHG
DAAPRGKRDDEGPRPYKPRGEDAPRAAGFKSHGKPVRAEGDGPRARPARSADDRPAKAGG
FKAREDRPAKPRAEGAAERPARSGFKKDFGKKDAPRKPRAEASDTSRRFTPPKKPRS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaactgatattgccgcgccgctggccgcggcgcttgccgccaagggctacgag
tccctcactccggttcaggaggcggtgctcgccgaaggcgtggccgggcgcgatgcgctc
gtctcggcccagaccggctcgggcaagaccgtggccttcggcatcgccatcgccgaccag
atcctgcagggggccgaccggctcctgttcgcggacacgccgatcgcgctcgccatcgcg
cccacccgcgagctggcgcttcaagtcgcccgcgagctgggctggctctatggcgaggcc
ggcgcccatatcgccacctgcgtgggcggcatggactaccgcaccgagcggcgcgcgctc
gaccgcggcgcccatatcgtcgtgggcacccccggccgcctgcgcgaccatatcgagcgc
ggctcgctcgacctctccggcctgcgcgccgtggtgctggacgaggccgacgagatgctc
gacctcggcttccgcgaggatctggagttcatcctgggctcggccccggaagagcggcgc
acgctgatgttctcggccaccgtgccgaaggagatcgaggcgctcgccaaggaattccag
caggacgccgtccgcatccagaccgcgggcgagcgcaagcagcatgccgacatcgaatat
cgcgccctgaccgtcagcgcgcgcgacaaggaacatgcgatcttcaacgtgctgcgcttc
tacgaggcgccctcggccatcgtcttctgcaagacgcggctagcggtgaaccatctgctc
gcgcggatgggcaaccgcggctttcaggtcgtggcgctctcgggcgaactctcgcagcag
gagcggacccatgcgctgcaggcgctgcgcgacgggcgcgcccgggtctgtatcgcgacc
gacgtggccgcgcgcggcatcgaccttccggggctcgagctcgtgatccacgccgatctg
cccaccaactccgagacgctgctccaccgctcgggccggaccggccgtgctggctccaag
ggcgtgtcggtgctgatcgcggcgccgtccgaagtgcgcaaggcgcagcggcttctgacc
ggcgcgaagctcgtggccgactggggcaagccgccatcggccgacgaggtgcaggagcgc
gacgacgcgcggctgctcgagcatccggtgctggggcaggatctgtccgacgagatgccg
ctggccgagaagctgctcgaacggttcggcccggcgcagatgtcggcggccttcgtccga
ctgtggcgcgaggggcgctcggcgcccgaggtgctgcaggatctggccccgccggagccc
tcgcagcgcgcgccgcgcgagcggggcgagttcggcgaggcggtctggtatgcggtggcc
gtcggccacaccggccgggccgaggcgcgctggctgctgcccaagatctgcgaggcgggc
ggcgtgaccaagaacgagatcggcgccatccgcgtccagcaggagcagaccttcgtccag
atcgcgaaggcggccgctgggaagttcggcgccgcgctcgagatcgaggcgggcgtgggc
atggtgcgcctcgacggcgagcccatgctggagcgccccgaacgcgcgccgcgcaagccg
ttcgccgagcgcgccccccgcgcccgggacgaggcgccccggcgcgagaaggcgccctac
cagcccaagccctcgcgcttcgtcgaggaagatccgggcgaggcccgtggcggctggacc
ccggacgaccgccccgagcgggcgccccggccgcgccgcgaggacggcgcgccgttcgcg
aagcgtgacatgaacgacgccccgcggccccgtcgcgagagcgcggccgaagacgagggc
cgcaagcccaggcggtcctcggacgagcgtccggcgcgtccggcagcggccggccgctcg
gcaggcttcaagtcgcacggcggcaccgcctcgcggtcggcgggctacaagtcccatggc
gatgcggcgccgcgcggcaagcgcgacgacgaaggcccgcggccctacaagccgcggggc
gaggatgccccccgcgcggccggcttcaagtcgcacggcaagcccgtccgggccgaaggc
gacgggccccgcgcccgcccggcccgcagcgccgacgaccgtcccgccaaggccggcggc
ttcaaggcgcgcgaggaccgcccggcgaagccccgggccgaaggcgcggccgagcggccc
gcccgctcgggcttcaagaaggacttcggcaagaaggatgccccgcgcaagcctcgcgcc
gaggcgtccgacacgagccgtcgcttcacgccgccgaagaagccgcggagctga
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