Ruania suaedae: LQF12_13210
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Entry
LQF12_13210 CDS
T08275
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rsua
Ruania suaedae
Pathway
rsua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LQF12_13210 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsua03021
]
LQF12_13210 (rpoB)
03400 DNA repair and recombination proteins [BR:
rsua03400
]
LQF12_13210 (rpoB)
Enzymes [BR:
rsua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LQF12_13210 (rpoB)
Transcription machinery [BR:
rsua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LQF12_13210 (rpoB)
DNA repair and recombination proteins [BR:
rsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LQF12_13210 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF6292
Motif
Other DBs
NCBI-ProteinID:
UFU02444
LinkDB
All DBs
Position
complement(2872183..2875701)
Genome browser
AA seq
1172 aa
AA seq
DB search
MAASRTPSAPTAEAIAQRTASRRVSFARIHEPLQAPDLLGLQTDSFDWLLGNERWQARVE
AAVSSGNNDVTTTSGLEEIFTEISPIEDFGSTMSLSFRDHRFEPPKYTAEECKEKDFTYS
APLFVTAEFVNYTTGEIKSQTVFMGEFPLMTDRGTFIINGTERVVVSQLVRSPGVYFDQT
PDKTSDKDIFTAKVIPSRGAWLEFEIDKRDAVGVRVDRKRKQSVTVFLKALGMTESEIRE
EFADYPTVLETLEKDSVHTQDEALLDIYRKIRPGEPPTVEAGTALLDNFYFNGKRYDLAK
VGRYKIDKKLGVDAPLENSVLSLTDVTATIKYLAALHKGEDELPGVRHGEPIEVRVETDD
IDHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKE
FFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETP
EGPNIGLIGSLATYARINPFGFVETPYRKVVKGKVTDQVDYLTADDEDRYVIAQANAPIA
EDGRFAEETALVRLRGGEAIDMPVNDIDYMDVSARQMVSVATAMIPFLEHDDANRALMGA
NMQRQAVPLVRSEAPLVGTGMERRAAVDAGDVIVASKAGVVTEVSADAVVVANDDGTTMT
YRVAKFRRSNQGTCYNQRVLVEEGAKISEGSVLADGPATDEGELALGRNLLVAFMSWEGH
NFEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSDDVLADLDERGI
IRIGAEVGAGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGTVIA
VREFNREDGDELPPGVNQLVRVYIAQRRKITDGDKLAGRHGNKGVISKILPIEDMPFLED
GTPVDIILNPLGVPGRMNVGQVLETHLGWVAKQGWDVGIEQAKNGQMPAWASHLRDDARV
GEPGTPVASPVFDGLHEDELQGLLECTRETRDGDRLIDSTGKAHLFDGRSGEPFPAPIAV
GYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYAL
QELLTIKSDDVPGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLNSDGTSI
EMRDTDEEVYRAAEELGIDLSRRPDASSVEEI
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcaccccttctgctccgaccgctgaagctatcgcccaacgtactgcc
tctcgccgggtctccttcgccaggatccacgagccgctccaggcaccggatctgctcggt
ctccagaccgacagcttcgactggctgctcggcaacgagcggtggcaggcgcgggtcgaa
gccgcggtctcctcaggcaacaacgacgtcacgaccacctccggtctggaggagatcttc
accgagatctccccgatcgaggacttcgggtcgacgatgtcgctctccttccgtgatcac
cgcttcgagccgccgaagtacacggccgaggagtgcaaggagaaggacttcacctactcc
gcgccgctgttcgtgacggcggagttcgtcaactacaccaccggtgagatcaagtcccag
acggtgttcatgggtgagttcccgctcatgaccgaccgcgggacgttcatcatcaacggc
accgagcgggtcgtcgtctcccagctggtgcgctcgccgggcgtgtacttcgaccagacc
ccggacaagacctcggacaaggacatcttcaccgcgaaggtcatcccctcgcgcggcgct
tggctcgagttcgagatcgacaagcgcgacgccgtcggtgtgcgcgtggaccgcaagcgc
aagcagtccgtcacggtgttcctcaaggccctgggcatgaccgagtccgagatccgcgag
gagttcgccgactacccgaccgtgctggagaccctcgagaaggactccgtgcacacccag
gacgaggcgctgctggacatctaccgcaagatccgcccgggcgagccgccgaccgtcgag
gccggaacggcgctgctagacaacttctacttcaacggcaagcgctacgacctggccaag
gtcggtcggtacaagatcgacaagaagctgggcgtggatgcgccgctggagaactcggtg
ctctccctcaccgacgtgaccgccacgatcaagtacctggcggcgctgcacaagggcgag
gacgagctgccgggcgtgcgccacggcgagccgatcgaggtgcgcgtcgagacggacgac
atcgaccacttcggcaaccgtcgcatccgcgcggtcggtgagctgatccagaaccaggtg
cgcaccgggctgtcccggatggagcgcgtggtgcgtgagcggatgaccactcaggacgtc
gaggcgatcacgccgcagacgctgatcaacatccgtccggtcgtggcctccatcaaggag
ttcttcggcaccagccagctctcgcagttcatggaccagaacaacccgctggccggcctg
acgcacaagcggcgtctgtccgcgctgggcccgggtggtctctcccgtgaccgcgccggc
atggaggtccgcgacgtccacccctcgcactacggacgtatgtgcccgatcgagaccccg
gaagggccgaacatcggtctgatcggctcgctggccacctacgcgcgtatcaacccgttc
ggtttcgtcgagacgccctaccgcaaggtggtcaagggcaaggtcaccgatcaggtggac
tacctgaccgccgacgacgaggaccgctacgtcatcgcgcaggccaacgcaccgatcgcc
gaggacgggcgcttcgccgaggagaccgccctggtgcggcttcgtggtggcgaggcgatc
gacatgccggtgaacgacatcgactacatggatgtctccgcccggcagatggtctcggtc
gcgaccgcgatgatcccgttcctcgagcacgacgacgccaaccgtgcgctgatgggcgcc
aacatgcagcgccaggccgtgccgctggtccgttccgaggccccgctcgtgggcaccggc
atggagcgtcgtgccgcggtcgacgccggtgacgtgatcgtggccagcaaggccggcgtg
gtgaccgaggtctcggccgatgcggtggtcgtggccaacgacgacggcacgacgatgacc
taccgggtggccaagttccgccgctccaaccagggcacctgctacaaccagcgcgtgctc
gtggaggagggtgccaagatctccgagggctccgtgctcgcggatggtccggccaccgac
gagggcgagctggctctcggacggaacctgctggtggcgttcatgtcctgggaagggcac
aacttcgaggacgccatcatcctctcccagcggctggtgcaggacgacgtcctctcctcg
atccacatcgaggagcacgaggtcgacgcccgcgacaccaagctcggcccggaggagatc
acccgcgacatccccaacgtctccgacgacgtgctggccgacctcgacgagcggggcatc
atccgcatcggtgccgaggtcggggccggcgacgtcctggtcggcaaggtcaccccgaag
ggtgagaccgagctgaccccggaggagcggctgctgcgcgcgatcttcggcgagaaggcg
cgggaggtgcgcgacacctcgctgaaggtgccccacggcgagtccggcacggtgatcgcc
gtgcgtgagttcaaccgcgaggacggcgacgagctgccccccggcgtgaaccagctggtg
cgggtctacatcgcccagcggcgcaagatcaccgacggcgacaagctcgccggccgtcac
ggcaacaagggcgtcatctccaagatcctgccgatcgaggacatgccgttcctcgaggac
ggcacgcccgtggacatcatcctgaacccgctcggtgtcccgggccggatgaacgtcggc
caggtcctggagacccacctcgggtgggtcgccaagcagggctgggacgtcggcatcgag
caggcgaagaacgggcagatgcccgcctgggcgagtcacctgcgtgacgacgcacgcgtg
ggggagccgggtaccccggtcgcctccccggtgttcgacggtctgcacgaggacgagctc
cagggcctgctggagtgcacccgggagacccgtgacggggaccgcctgatcgactccacc
ggaaaggcccacctgttcgacgggcgttccggcgagccgttcccggccccgatcgccgtc
ggctacatgtacatcctgaagctgcaccacctggtcgacgacaagatccacgcccgctcg
accggaccgtactcgatgatcacccagcagccgctcggtggtaaggcgcagttcggtggt
cagcgtttcggtgagatggaggtctgggcgcttgaggcctatggcgccgcctatgcgctg
caggagctgctcacgatcaagtccgacgacgtcccgggccgcgtcaaggtctacgaggcg
atcgtcaagggcgagaacatccctgagccgggtatcccggagtcgttcaaggtgctgatc
aaggagatgcagtcgctgtgcctgaacgtggaggtgctcaactccgacggcacctccatc
gagatgcgcgacaccgacgaggaggtctaccgcgccgctgaagagctcggtatcgacctg
tcccgccgtcccgacgcgagcagcgtcgaagagatctga
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