Raphanus sativus (radish): 108805741
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Entry
108805741 CDS
T06014
Name
(RefSeq) adagio protein 2
KO
K12115
clock-associated PAS protein ZTL
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108805741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108805741
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
108805741
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_4
Kelch_3
Kelch_2
Kelch_6
Kelch_5
Kelch_1
PAS_9
F-box-like
PAS
PAS_3
F-box
PAS_4
PAS_8
Motif
Other DBs
NCBI-GeneID:
108805741
NCBI-ProteinID:
XP_018433181
UniProt:
A0A6J0JDS5
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All DBs
Position
6:24313089..24315966
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AA seq
614 aa
AA seq
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MEWDSDSDLSDGDEAGWFGGDNGPIPFPEISLPKTAPYGFVVSDALEPDQPIIYVNTVFE
IVTGYRAEEVIGRNCRFLQCRGPYAKRRHPSVDSTVVSKMRQCLEKGIEFQGELLNFRKD
GSPLMNKLRLVPIREDDEITHFIGILSFTDSDINLSPFPDLSAKEIPRRSRSFSSALPTG
ERNVSRGLCGIFELSDEVIALKILSQLAPSDIASVGCVCRRLNEVTKNDDVWRMVCQNTW
GTEATRVLESIPGEKRIGWVRLAREFTTHEANAWRKFTFGGTVEPSRCNFSACAVGNKIV
IFGGEGVNMQPMNDTFVLDLGSSSPQWKSVLVNSPPPGRWGHTLSCVNGSHLVVFGGYGI
HGLLNDVFLLDLDADPPTWREVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLNDT
FLLDLSMDTPTWREIPVPWSPPSRLGHTLTVYGDRKILMFGGLAKLGTLRFRSNDVFTMD
LSNDEPCWRPVIGYGSSLPGGMAAPPPRLDHVAVSLPGGRVLIFGGSVAGLASASQLYLL
DPAEDNPAWRILSVKGSPPRFAWGHTTCVIGGTRLVILGGQTGEEWMLNEAHELLLATSS
TAITSSRHEEKRVL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggaatgggacagcgattccgatctcagcgacggagatgaagctggatggttcggcgga
gataacgggccgattccgtttccggagattagtctccctaaaacggcgccgtatgggttc
gtggttagcgacgctctagagccagaccaacctatcatttacgtcaacaccgtcttcgag
attgtcactgggtatagggctgaggaagttatcggtagaaactgccggttcttgcagtgt
agagggccatatgctaaaagacggcatccctcggtagattccactgttgtatctaagatg
cgacaatgtctagaaaaaggcattgagtttcagggagagttgttgaacttcaggaaagac
gggtctcctttgatgaacaagctgcgtcttgtccccatccgtgaagatgacgagatcact
catttcataggcattctctccttcacagattctgatatcaatctcagcccctttcctgac
ttgtctgcgaaagaaattccaagaaggtctcgctcattctcctctgctttaccaaccgga
gagcgtaatgtttctcgtggactgtgtgggatattcgagctgagtgatgaggtaatagct
ctcaagatactgtcacagttggctccctctgatattgcatccgttggttgtgtgtgtcgc
cggctgaatgaggttacaaagaatgatgatgtgtggagaatggtttgtcaaaacacttgg
gggacggaggctacacgtgttctcgagagtatccccggtgaaaagaggattggatgggtg
cgattggctcgagagtttaccacacatgaagcgaatgcgtggaggaagtttacgtttgga
ggtactgttgagccttcccggtgtaacttcagcgcctgtgcggttgggaataagatagtt
atctttggcggggaaggtgtgaatatgcaaccgatgaatgatacatttgtgttggacctt
ggctctagtagtcctcagtggaaatccgttttggttaactctcctcctcctggtcgctgg
ggtcacaccctgtcttgtgtcaacggatcccatttagtagtctttggaggttacgggatc
catggattactgaatgatgtcttcttactagaccttgatgcagaccctcctacatggaga
gaagtatccggtttggctcctccaataccgagatcatggcatagctcgtgtacgctcgat
ggaactaagttgattgtatctggtggttgtgctgattcaggagctctgcttaacgataca
ttcttgcttgacctttccatggatacaccaacttggagggagatacctgttccatggtct
cctccatctcgcctcggacataccttaaccgtctatggtgaccgcaagattcttatgttt
ggtggtcttgcgaaattgggaactttgagattccggtccaacgatgtattcacgatggat
cttagcaacgatgaaccgtgctggagaccagtgattgggtatggatctagccttccagga
ggcatggcagctccaccaccgaggctagatcatgtggcggttagccttcccggtgggaga
gtcttgatatttggtggttcagttgcagggcttgcctcagcttctcagctttatcttctt
gatcctgcagaggataatccagcgtggaggatactgagtgttaagggaagtccaccacgg
tttgcttggggacacaccacttgtgtgatcggaggaactaggttggtcatcttaggtggt
caaacgggtgaagagtggatgctaaatgaagctcatgaactgctgttagctacctcttct
actgcaatcacctcatcaagacatgaagagaagagggtcctgtag
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