Raphanus sativus (radish): 108809168
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Entry
108809168 CDS
T06014
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03420
Nucleotide excision repair
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108809168
09124 Replication and repair
03420 Nucleotide excision repair
108809168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108809168
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108809168
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
108809168
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
108809168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
108809168
NCBI-ProteinID:
XP_018436806
UniProt:
A0A6J0JP51
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Position
1:complement(11831402..11834035)
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AA seq
450 aa
AA seq
DB search
MWQAIQARETGRTPPNSFANQLKSRRVSSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL
SGASDGSAAVFDTQRATDTEASGLIGKHKCVFSVDKGHEHGHKFAVSSAVWYPIDTGLFV
TGSFDHLVKVWDTNTAQAVVDFKMPGKVYRTAMSSLAMSHTLIAAGTEDVQVRLCDIASG
AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSVTQLGVRP
PILKHTAVSSKVSAEKSSSGGKNRLKTLQSKHTGSHNMKGSSSGKPSVEKPRQKRLHPGM
LSTLDRATAHYGVVTGLKATNDGMYLLSAGSDSRIRLWDTQSGCNTLLNFETGRLQTSKA
IQLATSDDPALVFVPCMKTVKAFGMWSGRTTMMFRGHYESVHTCCFNSTDQELYTSGADR
QILVWSPGGSMEDEMVQDEEVAEDKDNWSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaagccatccaagccagagaaaccggtcgaacccctcccaattccttcgcgaac
caactcaaatcgcgtcgcgtctcctctctccaactctctaatcgcaaagatttcgtttct
cctcaccgtggctccgtcaactcccttcaggttgatttgacggaagggaggtacttgctg
tcaggagcatcggatggttcagctgccgtgttcgacactcagcgcgcgactgatacagag
gcaagtggtcttatagggaagcacaagtgtgtgtttagtgtggacaagggacatgaacat
gggcataagtttgccgtttcttctgctgtttggtatcccattgacactggcctcttcgtt
acaggttcttttgatcatctcgtcaaagtctgggataccaatactgctcaggcggttgtg
gattttaagatgcctgggaaggtttatagaactgccatgtcttctttggctatgtctcac
acgcttattgctgctggcactgaggatgttcaggttcgcctctgtgatatagcttctgga
gctttctctcataccttatctggtcaccgtgatggtgttatgtcggtggaatggtctact
tccagcgagtgggttttgtacactgggggatgtgatggtgctatacgcttctgggacatc
agacgtgctggatgcttccgtgttttagatcaatcagttacacaacttggggttcggcca
ccgattttaaagcatacagcggttagtagtaaggtttcagctgaaaaatcttcttcaggg
ggcaaaaataggctgaagacgctgcagagtaaacacacgggcagccataatatgaaggga
tcatctagcggtaaaccttcagtggagaagcctagacagaagagacttcatcctggaatg
ttgtctactctagatcgtgccacggctcattacggtgttgttactggattaaaggcaact
aacgatgggatgtatcttcttagcgctgggtctgattcaagaataaggctgtgggatact
caatctggatgcaatacccttttgaactttgaaactgggcgccttcagaccagcaaagcg
attcagttagctacaagcgatgatccagctcttgtgtttgttccatgcatgaagactgtg
aaggcttttggcatgtggtcgggtagaacaacaatgatgtttcgtggacactacgaaagc
gtgcacacttgctgctttaattccactgatcaggagctatacacaagtggtgcagataga
caaatactcgtgtggtcaccaggtggatccatggaagacgaaatggtgcaagatgaagaa
gttgccgaagataaagacaattggagcgactaa
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