Raphanus sativus (radish): 108816248
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Entry
108816248 CDS
T06014
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108816248
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108816248
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Hyphal_reg_CWP
Motif
Other DBs
NCBI-GeneID:
108816248
NCBI-ProteinID:
XP_018444322
UniProt:
A0A6J0K8G5
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Position
7:complement(953169..957935)
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AA seq
521 aa
AA seq
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MVAHERVHILQKPTCIWMIWFCLLVSISHHGISSYSLSSPASTSTSSFNLSLPHQHPFPE
DVVLNVQRKLNDSLCRRNLLTYQQDDGTTPIPSCITGNPVDDCWRCDPNWSQNRQRLADC
SIGFGQGTLGGKGGRFYLVTDSSDHDAANPTPGTLRHAVIQPEPLWIVFSSDMGIRLRHE
LIVGSYKTIDGRGANVQITGHGCLTVQQVSHVIIHNVHVHHCKPSGNTLVASSPTHVGFR
GVSDGDGISVSASHHIWVDHCSLGYCSDGLIDVILASTAVTISNNYFHHHDEVMLLGHDD
RYTADSGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSANPTINSQG
NRYTAPINPNAKEVTKRVDTNEKHWGKWNWRTDGDVMVNGAFFVPSGDGVSLAYARATSL
QAKAAGFIDQLTVNAGVFGDPSGRNGQGGGFPGITDGGGTITRGYSKGGPGGGGSSDSDG
GLFSMIFGSNTNAAAAALRPRQVWSILFTIILIWYFSHHRR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggtggctcatgagagggtccatattcttcaaaaaccaacatgcatttggatgatctgg
ttctgcctcttggtttctatctctcaccatggaatatcatcttattcattatcatcacca
gcatcaacctcaacatcttctttcaatctttctctcccacaccaacacccattccctgaa
gatgttgttcttaatgttcaaaggaagctcaacgactccctctgcagaagaaacctcctc
acttaccaacaagacgacggcacgacgccgataccttcctgcatcaccggaaacccagtc
gacgactgctggcgctgcgacccgaactggtctcaaaaccgccagcgcctcgccgactgc
tcgatcggcttcggacaaggcactctcggcggcaaaggcggacgcttttacctcgtcacc
gactcctccgaccacgacgcggcgaacccgacccccggtaccctccgccacgccgtgatc
cagccggagccgctctggatcgtcttctccagcgacatggggatcagactcagacacgag
ctcatcgtcgggagctacaagaccatcgacggacgcggcgcgaacgtccagatcaccggc
cacgggtgcctcacggtccagcaggtgagccacgtcatcatccacaacgtccacgtccac
cactgcaaaccctcggggaacactctggtcgcttcttcgccgacgcacgtcgggttccga
ggagtctccgacggagacgggatctccgtctccgcttcgcatcacatttgggtcgatcac
tgctctctcggatactgttccgacggactcatcgacgtcatccttgcgtcaacagctgtt
acgatctccaacaactactttcatcaccacgacgaagttatgctcttagggcacgacgac
cggtatacggcggactcggggatgcaagtgacgattgcattcaatcattttggagaaggg
ctcgtgcagaggatgccacggtgtagacatggttatattcatgtggtgaacaatgatttc
actgcatgggagatgtatgcaattggtgggagtgctaatcctacgatcaatagtcagggt
aatcgttacactgcacctattaatcccaatgctaaagaggtgacgaaacgagtggacaca
aacgagaaacattggggaaaatggaactggaggacggacggcgacgttatggttaacgga
gcgtttttcgtgccgtcaggtgatggagtcagcctagcttacgcccgagccactagtctt
caggcaaaagcggccggattcattgaccagctaacggtcaacgccggtgttttcggcgat
cccagtgggagaaacggccaaggaggaggttttcccggaatcactgacggtggtgggacc
attacacgcggttacagtaaaggtggacccggcggtggcggcagcagcgacagcgatggt
ggccttttctcaatgatattcggtagtaatacaaatgccgcggcggcagctttgaggccg
agacaagtctggtcgattttgttcactattatattaatttggtatttttcacaccatagg
agatga
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