Raphanus sativus (radish): 108817625
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Entry
108817625 CDS
T06014
Name
(RefSeq) probable pectate lyase 13 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108817625
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108817625
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108817625
NCBI-ProteinID:
XP_018445863
UniProt:
A0A6J0KE53
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Position
7:complement(18166307..18171229)
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AA seq
489 aa
AA seq
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MLPPHFSSNTIVLLCLFFTLLQATPPLNLTLPHQHPSPDSVALHVTSTINASLSRRQLTS
SSSSSTCGTGNPIDDCWRCDSSDWSSNRQRLADCSIGFGSGTLGGKNGRIYTVTDSSDNN
PANPTPGTLRHAVIQEEPLWIVFSSNMFIRLKQELIINSYKTLDGRGSAVHVTGNGCLTI
QYVQHVIVHNIHIYDCKPSGGAVVAASPTKVGRRGRSDGDGISIFGSQKIWVDHCSLSHC
TDGLIDVVLGSTAITISNNYFTHHDEVMLLGHDDKYVLDTGMQVTIAFNHFGQGLVQRMP
RCRRGYIHVVNNDFTSWKMYAIGGSGNPTINSQGNRYSAPSNPSAKEVTKRVDSTDDGEW
ANWNWRSEGDLMENGAFFVASGEGVSTLYSKASSVQPKAAAQVDQLTQNAGVFGGPRDDE
GQSGDSYSGYGGGGTGAIGGTSRGSSSNNDNNFFGMIFGSNAPPRPRLTLSLLSLLMICV
LSTSTLLLS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctccacacttctcctccaacaccattgtcttgctctgcctcttcttcacactc
ctccaagctacaccacccctaaacctcactctccctcaccaacacccttcccctgactcc
gtcgctctccacgtcacaagtacaatcaatgcatccctctcacggagacaactcacctcc
tcctcctcctcctccacttgcggtaccggaaacccaatcgacgactgctggcgctgcgac
tcctccgactggtcctccaaccgtcaaagactcgccgactgctccatcggcttcggctcc
ggcaccctcggcggcaaaaacggccggatctacaccgtcacagactcctccgacaacaac
ccagcgaacccaaccccagggacactccgccacgccgtcatccaagaagagcccctctgg
atcgtcttctcctccaacatgttcatccgcttgaaacaagaactcatcatcaacagctac
aaaaccctcgacggccgtggatccgccgtccacgtcaccggcaacggctgcttgaccatc
cagtacgtgcagcacgtcatcgtccacaacatccacatctacgactgtaaaccctcggga
ggagccgtcgtcgccgcttcgccgaccaaagtcgggaggagaggtagatccgacggcgac
gggatctccatcttcggatctcagaagatctgggtcgaccactgttccttgagtcattgc
accgatgggcttatcgatgtcgtgttgggctcgacggcgattacgatatcgaacaattat
tttactcatcacgatgaggtgatgctgttgggtcatgatgataagtacgtgctggatacg
gggatgcaggtgacgattgcgtttaaccatttcggacaggggcttgttcagaggatgcct
aggtgtcggagagggtatattcatgttgtgaataatgattttacgtcttggaagatgtat
gctattggtggtagtggtaatcccactattaacagtcaagggaatcgttactctgctcct
tctaatcctagcgccaaagaggtgacgaagcgagtggattcgacagacgatggtgagtgg
gcgaattggaactggagatcagaaggagatttgatggagaacggagctttcttcgtggcg
tctggtgaaggagtgagcacactgtactctaaagcttcgagtgtccagcctaaagctgcg
gctcaagtagaccagctcactcaaaacgctggcgttttcggcggtcccagggatgatgaa
ggtcagagcggcgattcttattctggttatggcggtggagggactggcgctataggtggt
acgtcaagaggaagcagcagcaataatgacaacaatttcttcgggatgatattcggaagc
aatgctccgccgcgaccacgtttaacgttatcattgttgtctttgttaatgatttgtgtt
ttgtcgacatcaactctattattgtcgtag
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