Raphanus sativus (radish): 108819361
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Entry
108819361 CDS
T06014
Name
(RefSeq) probable pectate lyase 15
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108819361
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108819361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108819361
NCBI-ProteinID:
XP_018447879
UniProt:
A0A6J0KLH7
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MASSSQKLTSVCFAVLVLVLLALTATIFRKLEIPSSRKLKTEELQSSENNSSIMAAKRVK
GVELNEQHAVSDPDRVADEVATLVQMSEHNNTARRKLGFFSCGTGNPIDDCWRCDHNWHK
NRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDDDVINPKPGTLRHAVIQEEPLWIVFKRD
MVIELKQELIMNSFKTIDGRGSNVHIANGACITIQFITNVIIHGLHIHDCIPTGNAMVRS
SPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNE
VMLLGHSDSYTKDKVMQVTIAYNHFGKGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSA
EPTINSQGNRYAAPMDRFAKEVTKRVGTDADDWKKWNWRSEGDLLLNGAFFRASGTEASA
SYGRASSLAAKPSSMVHTITSTAGALGCRKGRPC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcttctcagaaattgacctctgtttgcttcgccgtcctcgtcctcgtcctc
ttagctctcaccgcaacgattttccggaagcttgaaatccctagctccaggaagctgaaa
acagaggagctgcagagctcagagaacaacagctcgataatggcggcgaagagggttaaa
ggtgtggagttgaatgaacaacacgcggttagtgatccagatagggtcgctgatgaagtc
gctacgcttgttcagatgagcgaacataacaacacagcaaggagaaagcttggattcttc
tcttgtggaaccggtaatccaatcgatgactgctggcgttgtgaccataactggcataag
aaccgtaaacgcctcgccgactgtgggattggttttggacgcaacgctattggtggtcgt
gatggacgcttctacattgttactgaccccactgatgacgacgttattaaccccaaacca
ggaactctacgccacgccgttatccaggaggagcctctgtggatcgtgttcaagagagac
atggtgattgagctgaaacaggagctgattatgaacagtttcaagaccattgatggtcgt
ggttccaatgtccatatagccaatggtgcttgcatcactatccagtttatcaccaatgtt
atcattcatggtcttcacattcatgattgcatacctactggaaacgcaatggttagaagc
tccccatctcattttggttggaggacaatggctgatggtgatgcagtctctatctttgga
tcgtctcatatctggattgatcataactctctctctcactgtgccgatggacttgttgac
gctgtcatgggttccactgctattaccgtttccaataaccacttcacacaccacaatgag
gtgatgttgctaggccacagtgattcctacacaaaagacaaggtgatgcaagtgaccatt
gcttacaaccattttggaaaaggattggttcagagaatgccgaggtgcagacatgggtat
ttccatgtggttaacaacgactacacacactgggagatgtatgcaattggtggaagtgca
gagccaaccatcaacagtcaaggaaacagatatgctgctcccatggatcgtttcgccaag
gaggtaacaaaaagagtagggacagatgcagatgattggaagaagtggaactggaggtcg
gaaggagatcttctactgaatggagcattcttcagggcatcaggaacagaagcttcagct
agctacggaagagcctcgagcttagcagctaaaccatcatcaatggtccacacgataacc
tctactgcaggagcactaggttgccgcaaaggcaggccttgctag
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