Raphanus sativus (radish): 108822294
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Entry
108822294 CDS
T06014
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108822294
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108822294
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108822294
NCBI-ProteinID:
XP_056842782
UniProt:
A0A9W3BU05
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Position
5:24092497..24095925
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AA seq
476 aa
AA seq
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MMLQRSCIVLFSLSLFVPHMGFAMLNRTLLLIPHPDPELVAHDVHRRVNASLWRRQVMDT
TDQAGSSPCFTGNPIDDCWKCDPNWPNNRQRLADCGIGFGQYALGGKGGRFYFVTDSSDD
DVVEPKLGTLRYAVIQVEPLWIVFPSNMMIKLKHELIFNSYKTLDGRGANVHIVGGGCIT
LQYVSNVIIHNIHIHHCHPSGNTNIRSSPTHYGLRTESDGDGISIFGSKDIWIDHCSLSR
CRDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLVQRM
PRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDW
KGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVDPKSASFIDQITFHCGVLGVGGRNN
NLGMWTTTGSEGSGGLDSYNDYTDEMSGTGLTNRLSFSVIVIAFMFDMILYLSMLL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttcaaagaagctgcattgtacttttctcactttctctgtttgttccacacatg
ggtttcgccatgctcaacagaactcttcttctcataccacatcccgacccagagctagtc
gctcatgatgttcataggagggtaaatgcctctctatggagacgtcaagttatggatacg
acggaccaggccggttcaagcccgtgctttaccggaaacccaatcgatgactgttggaaa
tgtgacccgaactggcccaataaccgacaaaggctggccgattgtggaatcgggttcggt
cagtacgccttgggaggcaaaggcggtcggttctacttcgtcactgattcttccgacgac
gatgtcgtcgaacctaaactgggcactctcagatatgcagtgatacaagtagagccactg
tggatagtgttcccaagcaacatgatgataaaattaaagcatgagctaatattcaacagt
tacaagactcttgatggaagaggagctaatgttcatattgttggtggtggttgcatcact
cttcaatatgtctccaatgtcatcattcacaacatccatatccaccattgtcacccatcc
gggaatactaacataaggtcaagtccaacgcactacggattaagaacggaatcggacggt
gatggtatctccatcttcggatcaaaggacatatggatcgaccattgttctctatcaaga
tgtagagatggtttgatagatgctgtgatggggtccacagggattacaatatcgaacaac
ttcttctcacaccataatgaagtcatgcttcttggtcacagcgatcactacgagccagac
agtggcatgcaggtaaccattgcgtttaatcacttcggagagaagttggtacaaaggatg
cctagatgtagacgtggttatatccatgtggttaacaatgattttactcaatgggaaatg
tatgcgattggcggtagcggtaacccaaccattaatagtcagggtaaccgctataccgcc
ccaaccaacccgtttgccaaagaggtgactaaaagagtagaaacgccagatggtgattgg
aaagggtggaactggagatcggagggagacattttggttaacggagcgttcttcgtggca
tctggagaaggtgcggagatgaggtacgagaaggcgtacagcgtcgaccctaaatctgcc
tcgttcatcgaccaaatcacatttcattgcggcgttcttggcgttggtggcaggaataac
aatttggggatgtggactactactggatccgaaggtagtggcggtttagattcttataat
gactacaccgatgaaatgtctggcaccggtttaactaaccggttatctttctcggttatt
gttatagctttcatgttcgatatgatattatatttgtccatgttgttgtaa
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