Raphanus sativus (radish): 108835063
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Entry
108835063 CDS
T06014
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108835063
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108835063
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108835063
NCBI-ProteinID:
XP_018463869
UniProt:
A0A6J0LVP7
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Position
7:complement(9001768..9003668)
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AA seq
406 aa
AA seq
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MTLLHLSLSLFSCLFLVLASTSVASSHVSDPELVVQEVNHQINASRRNLGVLSCGTGNPI
DDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDPSDKDAVNPKPGTLRHAVI
QEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASIHIAGGACITVQYVTNVIVHGISIH
DCKKRGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLVDVIHGSTAI
TISNNYLTHHDKVMLLGHSDSYTRDKNMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDY
THWKMYAIGGSAAPTINSQGNRFLAPNDKAFKEVTKYEDAPQSKWKNWNWRSEGDLFLNG
AFFTPSGGRASSRYAKASSLSARPSSLVASVTGNAGALSCKKGSRC
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcttcacctgtctctctccctgttctcatgtctcttccttgtcctagcttcg
acctccgttgcatcctctcatgtctctgaccctgaactcgtagttcaagaagttaaccat
cagataaatgcttcgaggaggaatcttggtgtcctctcatgtgggaccggaaatccaatc
gacgactgttggagatgcgacccgaaatgggagaaaaaccgacaacgactagctgactgc
gccattgggttcggcaaacacgcaataggcggccgtgacggcaaaatatacgtggtgacc
gaccccagcgacaaagacgcggttaaccccaaaccgggaaccctaagacacgcagtgatc
caggaagaaccgctctggatcatcttcgcacgtgacatggtcataaagctaaaagaagag
ctgatcatgaactccttcaagaccatagatggacgtggagcgagcatccacatcgctggc
ggcgcgtgcatcactgtccagtacgtgaccaacgtcatcgtccacggcataagcatccac
gactgcaagaagagaggcaatgcatacgtcagagattcaccgtcgcattacgggtggagg
accgcgtctgatggtgacgcggtctctattttcggtgggtcccacgtgtgggtagaccat
tgctcgttgtcgaactgtgcggacggtctggtcgacgtgatccatgggtcaacggctata
acgatctctaataactacttgacgcaccacgacaaagtgatgcttttgggacacagtgat
tcgtacacgagagacaagaacatgcaagttaccgttgcttttaatcattttggtgaaggg
cttgttcagagaatgcccagatgtagacatggatattttcatgtggtaaataacgattat
acgcattggaaaatgtatgcaattggtgggagtgcggctccaacgattaacagtcaaggc
aatagatttcttgctccaaatgacaaagcctttaaagaggtgactaaatacgaagatgca
ccacaaagcaaatggaaaaattggaactggagatcagaaggcgacttgttcttaaacggt
gcgttcttcacgccctcaggtggaagagcttcttcaagatacgcaaaagcttctagtctg
tctgctagaccgtcctcgttggtagcttctgtcacgggcaatgctggtgctctctcttgt
aagaaaggatctcgatgttaa
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