Raphanus sativus (radish): 108836468
Help
Entry
108836468 CDS
T06014
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108836468
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108836468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Ribosomal_L19e
Motif
Other DBs
NCBI-GeneID:
108836468
NCBI-ProteinID:
XP_018465126
UniProt:
A0A6J0M0E1
LinkDB
All DBs
Position
2:28005104..28007583
Genome browser
AA seq
481 aa
AA seq
DB search
MARLLKLMFMFYIAGLMIPTIRANFSELDEYWSKRADEAREFTLQSYHSDPYEVVDHFHE
RHYDNSTDVTETEEDSDVEPEEVEDDVIEMVGDEMNSTRRILRGKNKGKGKGKGKRKGKW
SKLKGPCTASNPIDKCWRCRSNWARRRKNLVKCVRGFGHSTIGGKRGRIYVVTSNLDDDM
VNPRPGTLRHAVIQKEPLWIIFKNDMHIRLSQELMICSFKTIDARGADVHIAHGAGITMQ
FVRHVIIHGLHIHHICQSNGGMIRDSVNHFGMRTKADGDGISIYGSSQIWLDHISMSKCQ
DGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNDNQGDKKMQVTVAYNHFGKGLVQRMPR
IRWGFVHVVNNDYTHWELYAIGGSQAPTILSHGNRFIAPPHKPHYREVTKRDYAPENEWK
HWNWRSDKDMFMNGAYFRQSGNPHFKYVHTRKQMIKPKHGIAVSMLTKYAGALDCKVGKR
C
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggctaggctgttaaagttgatgtttatgttttatatcgccggcctgatgattccgacc
atacgagcaaacttttctgagttggacgaatattggtcgaaacgagccgacgaagcccga
gaattcacccttcaatcttatcattctgatccttacgaagtcgttgatcactttcacgaa
cgtcattacgacaactctactgatgtaacggagaccgaggaagatagcgacgtggagcct
gaagaggtggaagatgatgtcattgaaatggtcggagacgagatgaacagcacgaggcgg
atcttaagaggtaaaaataaaggtaaaggtaaaggtaagggaaaaagaaaaggaaaatgg
agtaagctcaaggggccgtgtaccgcaagtaacccgatagataaatgctggcgttgccgc
tcgaattgggctaggcgtcgtaagaatcttgtcaaatgtgtccgcgggttcggacacagc
acaataggtggaaagcgtggacgcatctacgtggttacaagcaacctcgacgacgacatg
gtgaaccctagacccgggacattacgtcacgccgtgattcagaaagaacctctttggatc
attttcaagaacgatatgcacattcgtttaagccaagagcttatgatttgtagcttcaag
acgatcgatgcgcgaggagctgatgtccatatcgcgcatggcgcagggatcacgatgcag
tttgtgagacatgtcattatccatggattgcatattcaccacatttgccagagtaacggt
ggtatgatccgagactcagtaaaccatttcggaatgagaacgaaagccgatggtgacggt
atatctatatatggttcgtctcagatatggcttgaccatatttccatgtctaaatgtcaa
gatggactcattgatgccattgttggatctactgccattacaatctccaactctcacttc
actcaccacaatgacgtgatgttgcttggtgcacaaaacgacaatcaaggagacaagaag
atgcaagtcacagtggcttataaccattttggtaagggacttgtgcagaggatgccaagg
atccggtgggggtttgttcatgttgtgaacaatgactacactcattgggagctttacgct
attggaggtagtcaagctcccacgatactcagccatggaaaccgattcatagctcctcca
cacaaacctcattaccgagaggtgactaagagagattatgctccggaaaatgagtggaaa
cattggaattggagatcagacaaagatatgttcatgaacggagcttattttagacaatct
gggaatcctcattttaaatatgtccacacgagaaaacaaatgattaaaccgaaacatgga
atagcggtttctatgctgaccaaatacgcgggagcacttgattgcaaagtcggaaaacgc
tgttag
DBGET
integrated database retrieval system
