Raphanus sativus (radish): 108840998
Help
Entry
108840998 CDS
T06014
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108840998
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108840998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108840998
NCBI-ProteinID:
XP_018469294
UniProt:
A0A6J0MB53
LinkDB
All DBs
Position
2:complement(32313775..32315846)
Genome browser
AA seq
394 aa
AA seq
DB search
MTLFSILCLCVTLFLSQSLVRAVNNGYYGYNPSFASYLPQKPQNIMNPVDSCWRLKSDWT
ANRKDLADCAVGFGSSAFGGKKGSIYVVTNPNDNAVNPQPGSLRYGVIQDKPLWITFAKD
MVITLENELMVNSYKTIDGRGANVEIAYGPCITIQEVTNVIVHGIRIHDCKPGKYGMVRS
STTHVGHRMGSDGDAIAISGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDK
VMLLGHNDNFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSA
DPTIFSEGNYFIASDNSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSVALP
YSSAQRFPVAPGNLVPSLTADAGPLNCYRNRPCY
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgactcttttctcaattttgtgtctctgcgtgacactattcttaagtcaatccttggtt
cgtgccgttaacaacggctattacgggtataacccgtcgttcgccagctacctgccccag
aaacctcagaacatcatgaatccagtggactcgtgttggcggctcaagtctgactggacg
gccaaccgcaaagatttagccgattgtgcggttggatttggttcatctgcctttggcggc
aagaaaggtagtatatatgttgtcaccaaccctaatgataatgcagtgaaccctcaaccg
ggttctctgcgatacggtgtgatccaagacaagccgctgtggatcactttcgctaaggat
atggtcataaccttagagaatgaactcatggttaatagctacaagaccatagatgggaga
ggggcaaacgtggaaattgcgtacggaccttgcattacgatacaagaagtgacaaacgta
atcgtgcacgggatcaggatccacgactgcaaaccgggtaagtacggaatggtgaggagt
agcacgacgcacgtaggtcatcgaatgggttcggacggtgatgcgatcgcgatttctggt
tcttctaatatttggatcgaccattgttacctagcgagttgtacggacggtctcatcgat
gtgatccacgcttccacgggaatcaccatttccaacaactattttactcagcatgataaa
gtgatgttgcttggacacaacgataatttcgtgcaagatgtgaaaatgaaagtaaccgtg
gcattcaatcattttggaccaggacttgtggagagaatgccaagggtacgacgagggtac
gctcatgtggcaaacaatagatacgataaatggataatgtatgcaattggtggtagcgcc
gatccaaccattttcagtgaaggcaactatttcattgcttctgataattctaacagcaaa
gaggtgacgaagagagaagtgaaaggaggatggaacaattggagatggagaacttcaaag
gacgttttcaagaacggagcttacttcgttccttctggttatgggagcgttgcgcttccg
tatagttctgctcaacgattcccagtcgctccagggaacttggttccttctctaaccgct
gatgctggccctctaaactgttaccgcaaccggccctgttattaa
DBGET
integrated database retrieval system
