Raphanus sativus (radish): 108842349
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Entry
108842349 CDS
T06014
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108842349
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108842349
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108842349
NCBI-ProteinID:
XP_018470727
UniProt:
A0A6J0ME46
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Position
2:complement(26481850..26483290)
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AA seq
378 aa
AA seq
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MVRFLALTLIQVFIVLFVANVLDSTELNVMDKCWRPNPHWRKTRNQLARCSVGFAGKMTG
NIGKGVTQYKVTDPSDDPLNPKPGTLRYGATLIKGKKWITFKRNMKIKLHKPLLISSFTT
LDGRGVSVHLSGPACLIVYKATDVIIHGLKIHDCKAHAPSSVMGPDSKIIQLGQVDGDAI
RLVTAKKVWIDHNTLYDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDKDM
RVTVVFNHFGPNCNQRMPRVRYGYAHVANNYYQGWTQYAIGGSMSPRVKSESNYFVAPKS
GRKEITWKKRSQGDQMQWKFYSVNDYFENGACFGLGKGIGKARPNYGPSQRFTVANAKTV
KELTSSAGALHCTRNSVC
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggtaaggttcttggccctaacgttgattcaagtcttcatcgttttgtttgtggcaaat
gtcttggattccacggaactaaatgtaatggacaaatgttggagaccaaacccgcattgg
cgtaaaacccgtaatcagctggctcggtgttctgtcgggttcgcaggaaagatgaccgga
aacatcggcaaaggagtcacacaatacaaagtaaccgacccttctgatgatcctctaaac
cctaaaccaggaaccctaagatacggagcaacgctcatcaaaggcaaaaaatggatcacg
ttcaaaagaaacatgaagatcaaacttcacaaaccgctactaatcagcagcttcacgaca
ctcgatggtcgcggtgttagcgttcatctctccggtcccgcttgtctcatagtctacaaa
gccaccgatgtgatcattcacggactcaaaatccatgattgtaaagctcatgcaccgagc
tcggtgatgggaccagactcaaagatcattcagcttggacaagtggatggggatgcgatt
aggctagtcacggctaagaaagtgtggatcgaccacaacacgttatatgattgcgaagac
ggtctattagacgtcacaagagggagtactgacgtcacggtttccaacaactggtttagg
aaccaggacaaggtcatgcttcttggacatgatgatggctatgtaagagacaaagatatg
agagtcactgttgtgtttaatcactttggtcctaattgcaaccagagaatgccaagagtg
agatatggatatgctcatgttgcgaataactattaccaaggatggacccaatacgctatt
ggaggaagcatgagccctcgcgtgaagagcgaatcaaactatttcgtcgcaccaaaatct
ggacgcaaagagataacttggaagaaacgtagccaaggtgatcaaatgcaatggaaattc
tactcggtgaatgattatttcgagaacggagcttgtttcggcctagggaaaggtattgga
aaagcccggcccaattatggcccatctcagaggttcacagtagcgaacgctaagaccgtt
aaagaactcacttcttcagctggagcgttacactgtaccagaaactccgtctgttag
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