Raphanus sativus (radish): 108842742
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Entry
108842742 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108842742
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108842742
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108842742
NCBI-ProteinID:
XP_018471254
UniProt:
A0A6J0MGL8
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Position
2:complement(33543004..33544967)
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AA seq
408 aa
AA seq
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MQTKKLFISVVTFLLYAPLMFSSPVPDPETVVEEVHKSINASVAARRKLGYLSCTTGNPI
DDCWRCDPHWEKNRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDDPVTPKPGTLRHAVV
QDEPLWIIFQRDMTIHLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIH
DCKPGGNAMVRSSPRHYGWRTMSDGDGVSIFGGSHVWVDHCSLSNCDDGLIDAIMGSTAI
TLSNNYMTHHDKVMLLGHRHSDTYTRDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNN
DYTHWEMYAIGGSANPTINSQGNRFVAPNIRFSKEVTKHEDAPESEWKSWNWRSSGDLLL
NGAFFTPSGGAASSSYAKASSLGARPSSLVGPLTVGSGALNCRKGSRC
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaagaagctcttcatctcagtagtcactttccttctctatgctccattgatg
ttctcttcaccagttccagacccagaaactgttgtcgaagaagttcacaagagcattaac
gcgtcggttgcagcaagaaggaagctaggctacctctcatgcaccaccggcaaccctatc
gacgactgctggcgatgcgacccacactgggagaaaaaccgtcagcgtctcgccgactgc
gccatcgggttcggcaagaacgccatcggcggccgtgacggacgtatctacgtggtcacc
gactcaggaaacgacgacccggtgacccccaagcccggaacgctgagacacgccgtggtt
caagacgagccgctctggatcatcttccaacgagacatgacgatacatctcaaagaagaa
ctcatcatgaactctttcaagaccatagacggtcgcggcgcgtccgtgcacatcgctggt
gggccttgcatcacgatccagtacgtgaccaacattatcatccatgggattcatatacac
gactgcaagccgggtgggaacgctatggtgcgaagctccccacggcattacgggtggaga
acgatgtcggacggtgacggtgtgtctatcttcggagggagtcatgtttgggttgaccac
tgttcgttgtctaactgtgacgacgggcttattgatgctataatgggctcgacggcgatt
actctgtctaacaattacatgacgcatcatgataaagtcatgttgcttggtcatagacat
agtgatacttacactcgtgacaagaatatgcaaatcactattgcttttaatcatttcggt
gaaggacttgttcagagaatgccaaggtgtagacatgggtacttccatgtggtgaacaat
gactacacacattgggagatgtatgcgattggaggaagtgctaatcctactatcaatagt
caagggaacagatttgtggcccctaatattagattcagcaaagaagtgactaagcacgag
gacgcgccggagagcgagtggaagagctggaactggagatcatctggtgacttgttgcta
aacggtgcgttttttactccttctggtggtgctgcctcgtctagctatgctaaggcttct
agtcttggggctcgaccttcttctctcgttggacctttgacggtgggttctggtgcactg
aattgccgtaaaggttcacgttgctga
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