Raphanus sativus (radish): 108843410
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Entry
108843410 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: starch synthase 3, chloroplastic/amyloplastic
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00500
Starch and sucrose metabolism
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Module
rsz_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
108843410
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
rsz01003
]
108843410
Enzymes [BR:
rsz01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
108843410
Glycosyltransferases [BR:
rsz01003
]
Polysaccharide
Storage polysaccharide
108843410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_5
CBM53
Glyco_transf_4
Glycos_transf_1
Glyco_trans_4_4
Motif
Other DBs
NCBI-GeneID:
108843410
NCBI-ProteinID:
XP_056862356
UniProt:
A0A9W3DFC1
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Position
1:complement(4710629..4716510)
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AA seq
1079 aa
AA seq
DB search
MEMCWQIQRPASLRPVLHQKARLKINTCIFFLHPPRPKSCSFFSLASLESRQYNSNGFLH
QITASAADFSRKKQGRTAASGPKSSAPTGSGRRTPKKKKGEKDSSNATSTVTNEFLRVSK
LPEAKTDVEKQSSAVFVERNVLDDALLQEKLKSEKENLRRKEIEALADETLARGDRMFVY
PLAAKPGDDIEVFLNKSVSTLNKEPDALIMGAFNDWRWKSFTRRLEKTWIHGGDWLSCLL
HIPKEAYKIDFVFFNGQSVYDNNDSKDFCIDVKGGEMDKVEFENFILEEKWREQEKLAKE
EAERGRKEEEKRRIEARKAAVEADRAQAKVETRKRREMLQQGLEKAVVSSKNVWYTEPSS
FKGEDKVKLYYNKSSGPLANAKEIWIHGGFNNWVDGLSIVEKLVDAAELKADSKSGDWWF
AEVMVPVRALVIDWVFADGPPEGAFLYDNNSRQDFHAPVHLTTPEEVYWSEEEDLMFRKL
QEERRLKEEAMRVKMEKTARLKTETKERTLRKFLLSEKDVVYTEPLEIQAGRPVTVFYNP
SNTVLNRKPEVWFRCSFNRWTHRLGPLPPQKMEAADDDGSSHLKTSAKVPLDAYMMDFVF
SEKEDGGIFDNRDGLDYHLPVVGGITKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAV
QELNHNVDIIFPKYDCIKYNFVKELQFNRSYHWGGTEIKVWHGKVEGVSVYFLDPQNGLF
QRGCVYGCADDAGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTHYGLV
KTRVVFTIHNLEFGAGAIGKAMTFADKATTVSRTYAKEVAGNSVISPHLYKFHGIVNGID
PDIWDPYNDSFIPVPYTSENVVEGKRVAKEELQNRLGLQSADLPVVGIVTRLTHQKGIHL
IKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSTHGDRARXVLTYDEPLSHLIY
AGADFILVPSIFEPCGLTQLIAMRYGSVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNG
FSFDGADAPGVDYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYHSARK
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgtgttggcagatacagagaccagcgagtctcagaccggtgttacatcaaaag
gctcggctcaagatcaatacttgtattttttttctccatcctcctcgccccaaatcttgc
tcctttttcagtcttgcttcgttggaaagtcgtcaatacaactcaaatgggtttctgcat
cagatcactgcaagtgctgcagatttttcaaggaagaagcaagggagaacggcagcttca
gggcccaaaagctcagctccaacaggctctgggcgacgaactccaaagaagaagaagggt
gaaaaagatagcagcaatgcaacttctacagtaacaaatgagtttttaagggtcagtaag
ctgccagaagcaaaaacggatgtggagaaacaaagctctgctgtttttgttgagaggaat
gtgttagatgacgctttgttacaagaaaagttaaaatctgaaaaagagaatcttcgtagg
aaggaaatagaagcgcttgcggatgaaacattggctagaggtgatagaatgtttgtatat
cctcttgctgcaaaacctggtgacgacatagaagtgtttctcaacaagagtgtatcaact
ctgaacaaagaacctgatgctttgatcatgggggcgtttaacgactggagatggaaatca
ttcacaaggagattggaaaagacatggatccatggaggagattggttgtcatgtctcctt
catatccctaaagaagcatataagattgatttcgtgtttttcaatgggcagagcgtttat
gacaacaacgactcgaaagatttctgtatagatgtaaaaggtggtgagatggataaagtt
gagtttgagaattttattctagaagagaagtggagagagcaagagaagctagctaaagaa
gaagctgagaggggaaggaaagaggaagagaagagaagaatcgaagctcgaaaagctgcc
gttgaagctgatagagcacaagcaaaggtggagactcggaagagacgtgaaatgcttcaa
cagggtcttgagaaagctgttgtctcgtctaagaatgtatggtacactgagccgagcagt
ttcaaaggtgaagataaagtgaagctgtattataacaaaagctctggtcctctagctaat
gctaaagagatatggatacatggagggtttaataattgggttgatggtttatctatcgtt
gaaaagcttgttgatgctgctgagcttaaggctgattcaaagagcggagactggtggttc
gctgaagtcatggtgccagtccgtgctctagtcattgactgggtctttgctgatggaccg
cctgaaggagcgtttctgtatgacaataatagtcgccaagatttccacgcgcctgttcac
ctaacaactccagaagaagtttactggtcagaggaagaagatctaatgtttaggaaactt
caggaggagaggaggttaaaagaggaagcaatgcgtgtcaagatggagaagacagctcgt
ttgaaaactgaaactaaggaaagaacgctcagaaagtttctgctttctgagaaagacgtg
gtttacacggagcctttagagattcaagcaggaaggcccgtgacagttttctacaatcct
tcgaatacggttttgaacagaaagcctgaggtttggtttagatgctcttttaaccgttgg
actcatcgcttgggtcctttgccacctcagaaaatggaagcagcagatgatgatggaagc
tcacacttgaagacttctgctaaggtccctttggatgcttacatgatggactttgttttc
tccgagaaagaagatggtgggatttttgataacagagatggcttggattaccacttaccg
gtcgtgggaggtatcaccaaggaaccaccattgcacattgttcatattgctgttgaaatg
gcacccattgcaaaagttggaggcttaggtgatgttgtcactagtctatctcgtgctgtt
caagaactaaaccataatgtggatatcatctttccaaagtatgattgcataaagtacaac
tttgtgaaggagttgcaattcaatagaagctatcactggggaggtacagaaataaaagtc
tggcatgggaaggtggaaggcgtttctgtttacttcttagatccgcaaaatggattgttt
cagcgaggatgtgtttacggttgcgcagatgatgcagggagatttggtttcttctgtcac
gctgctcttgagttccttctacaaggaggttttcatccagacattcttcactgtcacgac
tggtccagtgctccagtttcatggttgttcaaggatcattacacgcattacggtctagtt
aaaacccgtgttgtcttcacaatccataatttggaatttggggctggtgccattggcaaa
gccatgacatttgcagataaagcgactacagtgtcacgaacgtatgccaaggaagtagct
ggaaactctgtaatctctccacatttatacaagttccacggaatagtaaacggtatcgac
cctgatatatgggatccatataacgatagcttcatacccgttccttatacatcagaaaac
gtcgtagaaggcaaaagagtagccaaggaagaactgcaaaacaggcttggactacagagt
gctgatcttcctgtagtgggaatcgttacgcgtttaactcaccaaaaaggaatacatttg
atcaagcacgctatttggcgtaccttggaacgcaatggacaggttgtgttgctaggttca
gcaccggatccacggatccaaaacgacttcgtgaacttggcaaaccaattgcattctact
cacggtgacagagctcggnttgttctaacctacgatgaacctctttcccatttgatatac
gcaggggctgactttattcttgtaccgtccatatttgagccgtgtgggctgacacagctc
atagccatgagatacggctctgttcctgtcgtaagaaaaactggaggactctacgacacg
gtttttgatgtggaccatgataaagaaagggcacaagctcaagttctagaacctaatggc
ttcagcttcgacggggctgatgctcctggtgtggattatgctctcaatagggcgatatcg
gcttggtacgatgggagagagtggtttaactcactgtgtaagacggtgatggagcaagac
tggtcatggaatcgtcctgcacttgagtacattgagctctatcactctgcacgcaagtga
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