Raphanus sativus (radish): 108844394
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Entry
108844394 CDS
T06014
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108844394
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108844394
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108844394
NCBI-ProteinID:
XP_018473151
UniProt:
A0A6J0MNR2
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Position
3:27774808..27779392
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AA seq
524 aa
AA seq
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MVAHKGVHNHQKPTCICIPWFCLLVSLLHHGRASFPSSSSSSSSSSSFNLSLPHQHPFPE
HVVLNVQRKLNDSLSRRHLLTYQQDGDTTASPSPVPSCLTGNPIDDCWRCDPNWSQNRQR
LADCSIGFGQGTLGGKGGRFYLVTDSSDNDAANPVPGTLRHAVIQPEPLWIIFSGDMGIT
LRHELIVGSFKTIDGRGTKVEITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPTH
VGFRGVSDGDGISVSASHHIWVDHCSLGYCSDGLIDVILASTAVTVSNNYFHHHDEVMLL
GHDDRYTADSGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSANPTI
NSQGNRYTAPINPNAKEVTKRVDANEKHWGKWNWRTEGDVMVNGAFFVPSGDGVSPAYAR
ATSLQAKTADVIDQLTVNAGVFGDPGGRNGQGGGFPGITGGGGTVTRGYSKGGPGGGGSD
SDDGLFTMIFGSNSSAAAAALRPGQVWSILFTIILLWYFPHHRR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggtggctcataagggggtccataatcatcagaaaccaacctgcatttgcataccctgg
ttctgcctcttggtctctctccttcaccatggaagagcatcttttccatcatcatcatca
tcatcatcatcatcatcttccttcaatctctctctcccacaccaacacccattccctgaa
catgttgtccttaatgttcaaagaaaactcaacgactctctctccagaagacatctcctc
acttaccaacaagacggtgacaccacggcgtcgccgtcgccagtaccttcctgcctcacc
gggaacccaatcgacgactgctggcgctgcgacccaaactggtcgcagaaccgccaacgc
ctcgccgactgctcaataggcttcggacaaggcacactcggcggcaaaggcggccgcttt
tacctcgtcaccgactcctccgacaacgacgcggcgaacccagttcccggaaccctccgc
cacgccgtgatacagcctgagcctctctggatcatcttctccggcgacatggggatcact
ctccggcacgagctcatcgtcgggagcttcaagacgatcgacggacgaggcacgaaggtc
gagatcaccggccacgggtgcctgacgatccagcaggtgagccacgtcatcatccacaac
gtccacattcaccactgcaagccctccggtaacactctggtcgcttcctcgccgacgcat
gttggattccgaggagtctccgacggagacgggatctcggtctcggcttcgcatcacatt
tgggtcgatcactgctctctcggatactgttccgacggactcatcgacgttattctcgca
tcaaccgccgtcacggtctccaacaactactttcatcaccacgacgaagttatgctctta
ggtcacgacgaccggtatacggcggactcggggatgcaagtgacaattgcgtttaaccat
tttggggaggggctagtgcagaggatgccgcggtgcagacatggttatattcacgtggtg
aacaacgattttactgcatgggagatgtacgcgataggtggaagtgcaaaccctacgatc
aatagtcagggtaaccgttacactgcacctattaatcccaatgcaaaagaggtgaccaag
cgtgtggacgcaaacgagaaacactgggggaaatggaactggaggactgaaggagatgtt
atggttaacggagcgttcttcgtgccgtcaggtgatggagtgagtccggcgtacgcccga
gccactagtcttcaggcaaagaccgctgatgttattgaccagctcacggtcaatgctggc
gttttcggcgatcccggtgggagaaacgggcaaggaggaggtttccccggaatcacgggc
ggtggtgggaccgtgacacgaggttacagtaaaggtggacccggaggcggtggcagcgac
agcgatgatggccttttcacaatgatattcggtagcaattccagtgcggcggcggcggct
ttgaggccgggacaagtctggtcaattttattcactatcatcttactttggtattttcca
caccataggagatga
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