Raphanus sativus (radish): 108846338
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Entry
108846338 CDS
T06014
Name
(RefSeq) transcription factor SPEECHLESS isoform X1
KO
K20558
transcription factor SPEECHLESS
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108846338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108846338
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108846338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Nro1
Motif
Other DBs
NCBI-GeneID:
108846338
NCBI-ProteinID:
XP_018475067
UniProt:
A0A6J0MRJ5
LinkDB
All DBs
Position
Unknown
AA seq
345 aa
AA seq
DB search
MPDFLEECEFVDTSLAEDDLFAILESLEGAGEISPTAASTPYKDGTTSSKELVTDPNCET
SSPKKKRKRLETEKEDEEEEENTQQKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGD
QASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRLVPSPRPSPPVLSPRKPPLSPR
INHHHLLLPPISPRTPQPTSPYLAYPPQLPLIPQPPHRSYSSLAGGSSLGDPPPYSPASS
SSSPSVSSNRESSVINELVANSKSASADVEVKFSGANVLLKTASHKIPGQVLKIISALED
LSLEILQVNINTVDETMLNSFTIKIGIECQLSADELAQQIQQTFC
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgccggattttcttgaagagtgtgaatttgtcgacacttcactagccgaagatgatcta
tttgccatcttagagagtcttgaaggcgccggagagatatctccaacggctgcatctaca
ccttataaagatggaaccacaagttccaaagagttagtaactgatccaaactgcgaaact
tcatctcctaagaagaagaggaagagactagaaaccgagaaagaagatgaagaagaagaa
gagaatacgcaacaaaagatgtctcacgtaaccgtggaacgcaacaggagaaagcaaatg
aacgagcacttaaccgttttacgttctcttatgccttgtttctacgtcaaaaggggggac
caagcatcgattataggaggagttgtggaatacattagcgagctgcaacaagttcttcaa
tctttagaagccaagaaacaacgtaagacatatgcggaagtcctaagcccgagactagtc
ccgagtcctcgtccttcaccacctgtcctaagcccgcgaaaaccacctcttagcccgcgc
atcaaccaccaccatctccttctccctcctataagccctcgaacacctcagcctacaagc
ccatacctggcctatcctccgcaactaccactcatcccacagcctccccatcgttcttat
agctcattggccggtggtagcagcttaggggacccacctccatactctccagcttcatct
tcttcctctccttcagttagtagtaaccgtgagagtagtgtgataaatgagctcgtcgct
aactcaaagtcggcttcggctgacgtggaagtgaagttctcaggagctaatgttctgctc
aaaacggcgtcgcataagatccctggacaggttttgaagataatctctgctcttgaggat
ttgtctctcgagattcttcaggttaatattaacaccgtcgatgaaaccatgcttaattct
ttcaccatcaagattggaattgagtgccaactaagtgctgatgaattggctcaacaaatt
cagcaaacattctgctag
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