Raphanus sativus (radish): 108847931
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Entry
108847931 CDS
T06014
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108847931
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108847931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108847931
04121 Ubiquitin system [BR:
rsz04121
]
108847931
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108847931
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108847931
Spliceosome [BR:
rsz03041
]
Complex B
Other components
Prp19 complex
108847931
Complex C
Prp19-CDC5 complex
108847931
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
U-box type E3
108847931
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
108847931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_DCAF4
eIF2A
NBCH_WD40
zf-Nse
Beta-prop_DCAF12
Beta-prop_Aladin
WD40_like
Beta-prop_Nup120_160
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
108847931
NCBI-ProteinID:
XP_018476847
UniProt:
A0A9W3CUQ1
A0A6J0MWL1
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MNCAISGEVPVEPVVSKKSGLLYEKRLIETHISDFGKCPVTGEPHTIDDIVAIKTGKIVK
PKPLHTASIPGLLGTFQTEWDCLMLSNFSLEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARQLLAETDRQLPAATDRQLPAAPEVATENATLSNGKRAADGGEQGPDAKKMRLGV
SGEVITELTDCNAALSQQRKKRQIPPTLASVDALEKFTQLSSHPLHKTSKPGIFSMDILH
SKDVIATGGMDTTAVLFDRQSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWG
SSEGGNYACKHTLKDHTAEVRAVTVHATNKYFVSASLDSTWCFYDMSSGLCLAQVTDDSE
KVDYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGEITSVSFSENGYFLAT
SALDGVRLWDLRKLKNFRTFDFPNANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPVK
TLPDLSGTGRATCVKFGPDAKYVAVGSMDRNLRIFGLPSNDSTEDSAQDS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtgcaatttccggggaagttccggtggagcctgtggtttcgaagaagtctggt
ttgctctacgagaagcgcctaatcgagacgcacatctcggattttgggaaatgcccggtt
actggtgaaccgcataccattgatgacattgttgccatcaaaacgggaaagatcgtgaag
ccaaaaccattacacacagctagcatccctggattgctcggaacgttccagactgaatgg
gattgtttgatgctatcaaatttttcacttgagcaacaactccatactgcgaggcaagag
ctaagccatgctttgtatcagcatgatgctgcttgtcgtgtgattgctaggcttaaaaaa
gaaagagacgaggcacgacaattgcttgcagagactgataggcagttacctgcagcgact
gataggcagttacctgcagcccccgaagttgccacagagaatgctactcttagtaatggt
aaacgagctgccgatggtggtgaacaaggtcccgatgcaaagaaaatgcgtcttggagtt
tcgggtgaagttattacagaactgacagattgtaatgctgctctttcccagcagcgtaag
aagagacagatccctccgacgttggcttcagttgatgctctggagaagttcactcaactc
tcaagccacccacttcacaagaccagcaaacctggtattttttcaatggacatcctacat
tctaaggatgtcattgcgaccggaggaatggatacaactgccgttctctttgatcgtcag
tcaggacaaatcttgtcgacgttgactggtcattcaaagaaggttactagtattaagttt
gtaggtgacactgatcttgttttgactgcttcatcagacaagacagttcgtatctgggga
agttcagagggtgggaactatgcctgtaaacatacattgaaagatcacactgcagaggtg
cgagctgtcactgtccatgcaacgaacaaatactttgtgtcggcatcgctcgacagtacg
tggtgcttctatgatatgtcctctggtttgtgccttgcccaggtaacagatgattccgag
aaggtggattacacggctgccgctttccatcctgatggtctcattcttggaactggtacc
gctcaatctattgtcaagatttgggatgtaaagagtcaggcaaacgtggcgaagttcggt
ggccacactggtgaaatcacatctgtatcattttctgaaaatggttatttcctcgcgaca
tctgcgctggatggtgttagactgtgggacctgcgcaagctaaagaacttccgaacattc
gactttccaaatgcaaactcggtggaatttgaccatagcggatcttatcttggcattgct
gcttcagatataagagtattccaaacggccagtgtaaaagccgaatggaacccagtcaag
acacttcctgatctatccggtacaggtagagcaacatgtgttaagtttggtcccgacgcc
aaatacgtagcagtcggttcaatggaccgtaatctcaggatattcggtttacctagcaat
gacagcactgaagactctgcacaagattcatga
DBGET
integrated database retrieval system
