Raphanus sativus (radish): 108850740
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Entry
108850740 CDS
T06014
Name
(RefSeq) protein CLP1 homolog 5-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108850740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108850740
Enzymes [BR:
rsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
108850740
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108850740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
Cupin_NOL9
DUF1611
Mor
AAA_22
Motif
Other DBs
NCBI-GeneID:
108850740
NCBI-ProteinID:
XP_056864199
UniProt:
A0A9W3DKB9
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All DBs
Position
4:complement(32326244..32328945)
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AA seq
435 aa
AA seq
DB search
MSYSDATAAATTEFGPQVRRVTLEKQSEIRIQVPQISPLKIRVLYGNVEIFGSELPQNIW
LTFPPLQRFAVFTWYGATLEIDGVTKTDTISDETPMISYLNVHNSLQIQRHRVTSSTRDY
VSSQGPRVIIVGEDSGKSTLAKMLLSWAAKDGCKPTFVDLNVGQSSITITGTIAATTVEM
PVDPVEGLPLHKALVHYFGHSTVMNNIKLYKYLVEELARELEEEFALNGESRRSGMVIDT
MGWTNGLGYELLLHAIRTFNASVVIVLGQETKLTNDLNKAFRFKKNVQILNLERSSGVFP
RNSDLRKTLRNNSIQKYFNGARNNLTAYTKTAKFSDMQVYRIGALIGKSSSTKHKENYGN
PLKITPVLIDKDLVNTVLAISYAKHPEHIISSIVAGFVYITDVDLGEEELTYLSPSVAEL
PSKIFIMGTLTWHQT
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacagtgatgcaactgctgctgctactactgagtttggtcctcaggtaagaaga
gtgacgttagagaaacaaagcgaaataaggatccaagtgcctcagatttcgcctctcaaa
atccgtgtgctctatggaaacgtagagatctttggctccgagcttccacaaaacatctgg
ctcacgtttcctcctctccagagattcgccgtcttcacgtggtatggtgcaacactcgaa
atagatggtgtcacaaagactgacacaatatcagatgagacacctatgataagctatctt
aatgtgcacaactctctacaaattcaaagacatcgggttacgtcctcaacaagagattac
gtttcttcacagggaccaagggttatcattgtaggcgaagactctgggaagagcacatta
gctaagatgcttcttagttgggcagcaaaagatggttgcaaaccgacctttgttgatctt
aatgtcggacaaagctcaataacgataacaggaactattgctgctaccactgttgaaatg
ccggtggatcccgttgaaggacttcctcttcataaggcccttgtgcactattttggtcac
tccacagtgatgaacaacatcaagttgtacaaataccttgtcgaagagcttgctcgagaa
ttagaagaagagtttgctttaaacggagaatctcgacgttctggtatggtaattgacaca
atgggatggaccaatggtcttggttatgagctgcttctccatgcaataaggacttttaat
gcatctgtggttatcgtccttggccaagaaacaaaactcaccaatgatctgaacaaagct
ttcagattcaagaagaatgtacaaatcttgaatcttgagcggtcatctggagttttcccc
aggaattctgatcttcgcaaaacgttgagaaacaatagcattcagaagtatttcaatgga
gccagaaacaatctcacggcctacaccaaaaccgccaagttcagcgatatgcaagtttat
cgaatcggtgccttgatagggaagtcaagctctactaaacacaaagaaaattatggtaac
cctttgaagatcacacctgtgttgattgataaagatcttgtgaatacagttctggctatc
tcatacgccaaacatcctgagcatattatctcaagcattgttgctgggtttgtgtatatt
acggatgttgatcttggtgaagaggaacttacctatctctctccatccgttgctgaactt
cctagcaagatattcatcatggggactttgacatggcaccaaacttga
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