Raphanus sativus (radish): 108853022
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Entry
108853022 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108853022
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108853022
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Chondroitinas_B
Motif
Other DBs
NCBI-GeneID:
108853022
NCBI-ProteinID:
XP_018481993
UniProt:
A0A6J0NDQ5
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Position
4:7880548..7882023
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AA seq
372 aa
AA seq
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MASLVLLTFSLLFATFSSPLVDAFNYTDGGNSTLAAPALNPIDACWRRDAKWSTNRQALA
RCAVGFGKNAQGGSKGPIYVVTSPADDVGKPKPGTLRFGATQPKPLWITFQRDMVIRLKT
ELEVTSHKTIDGRGAKVDIGNGPCIAIKRATNVIIHGLTIHDCKLSKGFDGDGIRVFQSS
NVWIDHCHLSRCQDGLIDVVTSSTAVTISNNRLINHQKAMLLGHSDQHMADKNMKVTVAF
NVFGPGLTERMPRVRRGYAHVANNMYNKWNLYAIGGSADPTIYSEANHFIAPDRKEHKEV
TKRMDKSPAAKKGKWSTNKDVFINGAFFKASGGAGVPPPYGGGQAFPVAXGAQVPALTAS
AGPLNCAPGRVC
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggcttctctcgtgttattaacattttcactcctttttgcaactttctcttctcctctt
gtagatgcttttaattatactgatggtggtaattccaccctcgccgcgccagcactaaac
cctattgatgcttgctggcgaagagacgctaaatggtcgactaaccgtcaagccctggcc
agatgcgcggtagggttcgggaaaaacgcgcaagggggcagcaaagggcctatctacgtg
gttacaagcccagcagatgacgttggaaagcctaaacccggaactttaagatttggggcg
acccaacctaaaccactatggatcacattccaacgtgacatggtcataaggttgaaaacc
gagctcgaagtgacgagccacaagacgatagacgggagaggagcaaaagttgacattggc
aacggaccatgcattgcgatcaaacgtgcgaccaatgtcattatacatgggctaactatc
catgattgtaaattgagcaaaggatttgatggtgacggaatccgcgtgtttcaatctagt
aatgtttggatcgatcattgtcacttatctcggtgccaagatggtttgatcgatgtggtt
acatcttctacggctgtcacgatttctaataatcgtttaataaatcaccagaaagcgatg
ttgctcggacattctgaccaacatatggctgataagaatatgaaagttacagttgcattt
aatgtatttggaccgggtctcaccgagagaatgcctagggtaagaagagggtatgcgcat
gtagcaaacaatatgtacaacaaatggaatctgtatgcaattggaggaagtgctgatcct
actatctatagtgaagccaaccacttcattgctcctgacagaaaagaacacaaagaggtg
acaaagagaatggataaaagtcctgctgcaaaaaaaggaaaatggagtacgaataaggac
gttttcatcaacggagctttcttcaaggcgtctggtggagcgggcgtcccgccgccgtac
ggaggtggacaagcgtttccagtggccnccggggctcaagtccctgctcttactgcctcg
gctggtcctctcaattgcgcacccggcagggtttgctaa
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