Raphanus sativus (radish): 108855300
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Entry
108855300 CDS
T06014
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
KO
K03456
serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108855300
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rsz01009
]
108855300
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108855300
03036 Chromosome and associated proteins [BR:
rsz03036
]
108855300
Protein phosphatases and associated proteins [BR:
rsz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108855300
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108855300
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108855300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
Htt_N-HEAT_1
Vac14_Fab1_bd
PDS5
HEAT_EZ
Adaptin_N
SCD
Cnd1
CLASP_N
Motif
Other DBs
NCBI-GeneID:
108855300
NCBI-ProteinID:
XP_018484586
UniProt:
A0A6J0NKE9
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Position
4:14004920..14008989
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AA seq
587 aa
AA seq
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MSMTDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMKES
DLVEHFIPLVKRLAAGEWFTARVSACGVFHIAYPSAPDTVKTELRSIYTQLCQDDMPMVR
RAAATNLGKFAATIESAHLKTDVMSMFDDLTQDEQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILNPELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATFEHLL
PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNVKRLAEEFGPEWAMQHIVPQV
LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTAAKDRVPNIKFNVAKVLQS
LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgaccgacgagccgctctacccaatcgccgtcctcatcgacgagctcaagaac
gacgacattcagctacggttgaattcgatcaggaggctctccacgatcgctcgcgctctc
ggcgaggagaggacgaggaaagagctgattcctttcctgagcgagaacaacgacgatgac
gacgaggtgctgctcgcgatggctgaggagctgggagtgtttattccttacgttggtggc
gttgagcacgcgcacgttctgcttcctcccttggagacgctctccacggttgaggagact
tgtgtgagggagaaagctgttgagtcgctttgtagagtcgggtcgcagatgaaggagagt
gacttggttgagcatttcatacccttggttaagagacttgcagctggtgagtggttcact
gcaagagtatcagcttgtggggttttccatattgcataccctagcgccccagatacggtg
aagactgagttgagatcaatatatacccagctctgtcaagatgatatgccaatggtgcgg
agagccgcagcaaccaatctggggaaatttgctgctactattgaatcagctcatttgaag
actgatgttatgtctatgtttgatgatcttactcaagatgaacaagattccgttagatta
ttggcggttgagggttgtgctgctcttgggaaactgttggaacctcaggactgtgtcgcg
cacatccttcccgtgattgttaatttctcgcaggataagtcttggcgtgtgcgttatatg
gtagcaaatcagctctatgagctttgtgaagccgtgggacctgagcctactaggacggaa
ctggtgccggcatatgtgcgtctacttcgtgacaatgaggctgaagtacgcatagcagct
gctggaaaagttactaagttttgtcggatcctaaaccccgaacttgctattcagcacatt
ctcccttgcgtaaaggagctatcaacagactcatctcaacacgtcagatctgcattggcc
tcagttataatgggaatggctccggtcttgggtaaggatgcaacatttgagcatctcctt
ccaatcttcctttctctgttgaaagatgagtttccggatgtccgcttgaacattatcagc
aaactcgaccaagtgaaccaggttattggaattgatctactatcgcaatcgttattgcca
gcaattgtagaacttgcggaagatagacactggagagtaagacttgctatcattgagtac
atccctttgttggcaagtcagttaggtgttggcttctttgacgataagcttggcgctctt
tgcatgcaatggttacaagacaaggtccactcaatccgcgaggctgctgcaaacaatgtg
aagcgtcttgctgaggaatttggtcctgaatgggcaatgcaacatatagttcctcaggtt
cttgagatgatcaacaaccctcattatctataccgtatgaccattttgcgtgcggtttct
cttcttgcaccagtgatgggctcagagatcacatgctctaagctcttacctgtagtaatg
actgcggctaaagacagagttccaaacatcaaattcaatgtggctaaagtgcttcagtcc
ctcattccaattgtcgatcaatcggttgtagagaagacgattcgtccagggcttgtggag
ctaagcgaggatccagatgttgatgtcaggttttttgcaaaccaagctcttcagtctatt
gataacgtgatgatgtccagctaa
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