Raphanus sativus (radish): 108855518
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Entry
108855518 CDS
T06014
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108855518
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108855518
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Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108855518
NCBI-ProteinID:
XP_018484870
UniProt:
A0A6J0NJY8
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All DBs
Position
1:complement(6400025..6402108)
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AA seq
458 aa
AA seq
DB search
MAAKFLNIGGYIVVFFLSSLATLAPQARANIADFDDYWMQRQSDALKQTLASFNPNPLNV
TNHFNYHVALALETTESINGTRRSLLQARRGRKMQNRGKCVAHNPIDKCWRCDRDWEKNR
KKLAVCALGFGRRTSGGKDGPIYVVTDASDDDLINPKPGTLRHAVTRDGPLWIIFARNMV
LNLKQELMVTSDKTIDGRGARVYIMGGAGLTLQFVNNVIIHNIYIKHIVPGIGGLIRDSE
QHIGLRTRSDGDGINLFGATNVWIDHVSMARCSDGMIDAIFGSTAITVSNSHFTDHQEVM
LFGANNKHVIDKKMQITVAFNHFGKRLEQRMPRVRFGTIHVVNNDYTHWEMYAIGGNMNP
TIISHGNRFIAPPNERAKQITKREYTHYADWKLWNWQSEGDYFLNGAYFVQSGKPNAWSP
KPKNPIPNKFAIRPKPGTMVRELAMDAGVLGCKRGQAC
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaagtttttgaatatcggcggctacattgtcgtcttcttcttgtcatcatta
gcgacattagccccacaggctcgagccaatattgccgacttcgacgactactggatgcag
cgtcaaagcgatgctttgaaacaaactttggcctcttttaatccgaatccacttaacgtc
accaaccactttaactaccatgtcgctttagcattagagaccacggaatcaatcaacggc
acaagaagatcgcttttacaggcgagacgtggtcgtaaaatgcaaaacagaggaaaatgc
gtagctcataacccgatagacaaatgctggagatgcgaccgtgactgggagaaaaaccgt
aagaaactagcggtttgtgccctcggattcggcaggagaaccagcggaggaaaagacgga
ccgatctacgtggtcaccgacgcgtcagacgacgatcttatcaaccccaagccaggaacg
ttaagacacgcggtgacacgagacggaccgctttggatcatcttcgcaagaaacatggtc
ttgaacctgaaacaagaactgatggtgacgagcgataaaacgatcgatggacgtggagct
agggtttacatcatgggaggtgctggattaacgctgcagtttgtgaacaatgtgatcata
cacaatatctatatcaagcacattgttccgggcatcggtggtttgatcagagactctgag
caacatatagggctaaggacaagaagtgatggtgatggaatcaatttgtttggagcaacg
aatgtttggatcgatcatgtctcgatggcgagatgttctgatggtatgattgatgcgatt
tttggctccactgcaatcactgtctccaacagccacttcactgatcaccaagaggtgatg
ctttttggggccaataacaaacacgtgatcgacaagaagatgcagataacagttgcattc
aaccactttggtaagagactggaacagagaatgcctagggtcagattcggaacgatccat
gtggtgaacaatgactacacacattgggaaatgtatgcaataggtggaaacatgaaccct
acaatcattagccatggcaaccgtttcattgctcctcctaacgaacgagccaaacagatc
acaaagagagagtacacgcattacgcggattggaagctttggaattggcaatcagaagga
gattacttcttgaacggagcttactttgtgcaatcaggaaaacctaatgcgtggagccct
aaaccgaaaaaccctatcccaaacaagtttgcgatccgacctaaaccgggaacgatggtc
cgtgaactcgccatggacgcaggagtactgggatgcaaacggggtcaagcctgctga
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