Raphanus sativus (radish): 108855519
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Entry
108855519 CDS
T06014
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108855519
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108855519
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108855519
NCBI-ProteinID:
XP_018484867
UniProt:
A0A6J0NJD3
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Position
4:46691192..46693042
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AA seq
331 aa
AA seq
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MTTLPYADVDCNLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGSLREGGRRREPLW
IVFAVSGTIHLNSYLSVSSHKTIDGRGQRIKITGKGIRLKECEHIIICNLEFEGGRGHDV
DGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFGQHDKTMLIGADPSHVD
DRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA
GGKKKTFEYYPEKAADKEEVRAGLVRSENDLFLNGAQASLLTGAGGECVFHPSEHYPTWT
VEPPSDTLKQIIKICTGWQSLSSPSDHGVPK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgctaccatacgccgacgtcgactgcaacctcagagctttagccggccgtgcc
gagggtttcggccgattcgccgtcggcggtctccacggagatctctacgtcgtcacatcc
ctcgcagatgatggacctggatctctccgcgaaggaggaaggaggagagagccgttatgg
atcgtgttcgcggtttccggaactatacatctcaattcgtacttgagcgtgtcgtctcac
aagacgatcgatgggagaggacaacggatcaagatcacagggaaagggataaggctcaag
gaatgcgaacatatcatcatttgcaatttggagtttgaaggtggaagagggcatgatgtt
gatgggattcagattaagccgaagtctagacacatttggattgataggtgtagcttgagg
gattacgatgatggacttattgatatcactaggcagagcactgatatcaccgtttctaga
tgttactttgggcagcatgataagacgatgttgattggggcggatccttctcatgttgat
gatagatgcatcagagtgactattcatcattgtttctttgatggaactaggcagaggcat
cctcgtctcaggtttggtaaagttcatttgtataacaattatacaagaaactgggggata
tatgctgtttgtgctagcgttgaagcacaggtattttctcaatgcaatatatacgaagca
ggagggaagaagaaaacttttgaatactacccagagaaggctgctgacaaggaagaagta
agagctgggttggttcgatctgagaatgacttgttcttgaacggagctcaagcttccttg
ttgacaggggccggtggagaatgtgtgttccatccaagcgagcattacccgacttggacc
gtggagcctccatctgatactctcaagcaaatcatcaaaatctgtactggttggcaatct
ttatcttctccttcagatcatggagttcccaagtag
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