Raphanus sativus (radish): 108862272
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Entry
108862272 CDS
T06014
Name
(RefSeq) serine/threonine-protein phosphatase PP1 isozyme 9
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108862272
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rsz01009
]
108862272
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108862272
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108862272
03041 Spliceosome [BR:
rsz03041
]
108862272
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
108862272
Protein phosphatases and associated proteins [BR:
rsz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
108862272
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108862272
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108862272
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108862272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Arena_ncap_C
Motif
Other DBs
NCBI-GeneID:
108862272
NCBI-ProteinID:
XP_018491853
UniProt:
A0A6J0P755
LinkDB
All DBs
Position
5:complement(1913146..1915296)
Genome browser
AA seq
322 aa
AA seq
DB search
MTTTIPIPEGMMLEISTVDDIIRRLLEGKGGKQVQLSEIEIRQLCVNARQIFLSQPNLLD
LHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRY
PSKIFLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDKILCMHG
GLSPEMENLEQIREIERPTEIPDNGLLCDLLWSDPDQKHEGWRDSDRGISCTFGADVVAE
FLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDQSLVCSFE
ILKPAPSSSGIPLKKVPKMGKS
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgacaataccaataccggaagggatgatgttggagataagtacggtggatgac
atcatacgaagattactagaaggcaaaggaggcaaacaggtccagctctccgagatcgag
atccgtcaactctgcgttaacgccagacaaatcttcctctctcagcccaatctcctcgat
ctccatgcccccattcgcatctgcggtgatattcatggacaataccaagaccttctccgt
ctattcgaatacggaggctaccctccatcagccaactacctcttcctcggagactacgtc
gacagaggcaagcagagcctcgagaccatctgcctcctcttggcttacaaaatccgctac
ccgtccaagatcttcctcctcagaggcaaccacgaggacgccaagatcaacaggatctac
ggcttctacgacgagtgcaaacggaggttcaacgtcaggctctggaagatattcaccgac
tgcttcaactgtctccccgtcgccgccctcatcgacgacaagatcctgtgtatgcacgga
gggctgtcccccgagatggagaatttggagcagatcagggagattgagaggcctacggag
attccggacaacggtcttctatgtgatctgctctggtctgatcctgatcagaagcatgaa
ggttggcgtgatagcgatagaggtatctcgtgtacgtttggagctgatgttgtcgctgag
ttcttggataagaatgatctcgacctcatttgccgtggccatcaggtggtggaagatggg
tatgagttttttgcgaaaaggagattagtgacgatattctcagctccaaactatggtgga
gagtttgacaatgcaggtgctttattgagcgtagaccaatctcttgtttgttcttttgag
attcttaaacctgctccatcttcaagcggtattcctctcaagaaggtacctaaaatgggc
aagtcttga
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integrated database retrieval system
