Rissa tridactyla (black-legged kittiwake): 128908156
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Entry
128908156 CDS
T09443
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Pathway
rtd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128908156 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtd03019
]
128908156 (CNOT1)
Messenger RNA biogenesis [BR:
rtd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128908156 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128908156 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
128908156
NCBI-ProteinID:
XP_054053745
LinkDB
All DBs
Position
4:complement(72920174..72980060)
Genome browser
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLISPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctcattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagatcgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggtttttgtacaagtgtcgaagaatgtcgcaacataatcgtgcagttt
ggtgttcgggaagtcacagctgcccaggttgccagggttttggggatgatggctcgaact
cattcggggttgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgacgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaggagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccatccgggatttcagattcgtgacagcaagggcctgcatattgtagtgtttggt
atccagagggggctgggcatggaagtttttccagtgaatgccatatacagaccgtggaag
catgcagagggccagctctccttcattcaacattccctcataagccctgaaatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgttggtattggccttactgcagatcaacacttcctggcataccttgcgccac
gaactcatctccacgctcatgccgattttccttggcaaccaccccaactctgccatcatt
ttgcactacgcgtggcatggacagggtcagtctccttcgattcgacagcttatcatgcat
gcgatggcagaatggtacatgagaggggagcagtatgaccaggcaaaactgtcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcatgtctgcaggcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggcaagacagccaccacctggagtcatgccaaaaggacgtccgcccagtgcc
agcagcttggatgccatctctcctgtacagatcgactcccttgcgggaatggcatctctt
agtttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccgaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcatttccccctctttccacccaa
aatcagacaacaggtttcagcggcatcggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aacgacccattcgtgcagaggaagctgagcacatctggactgaaccagccgacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgacgaggcaaacagctacttccagcgcatttacaaccatccacca
catccgaccatgtccgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggccttgccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaggacgtgccgccttccattaataccaccaacattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaacgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaactgaaggaa
acagtgaaagaagagttcatgccttgggtgtcacagtatctcgtgatgaagcgagtcagt
atcgagcctaattttcacagcctatattcaaacttcctcgacacgcttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaataagcccattttgcacacggatctggatgtgaaatcgctc
ctactggaagcatacgttaagggacagcaggaattgctttacgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagcgtggtcttcaggcctccaaacccgtggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaagcctgga
agcctactgaaagataaggatcgtctgaaaaatctggatgagcagctctctgctccaaag
aaggatgtgaagcagccagaagaactaccgcccatcacaacaactactgcttctacaact
ccagccaccagcaccacttgtacagccacggttccgccccagccccagtacagttatcac
gacatcaacgtctattctttaggagggttggctcctcatattaccttaaacccaacgatt
ccgctgtttcaagcccacccgcagttgaagcagtgtgtgcggcaggcgatcgagcgagca
gtgcaagagcttgtccatccagtggtcgatcggtccattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcgttggattctgaggagtcacgaatgcgtgtggct
gcgcaccatatgatgcggaacctgactgctgggatggccatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaatagttttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagttagcgcaggataactgt
gagttggcgtgctgctttatccagaaaacagctgtggaaaaggcaggccccgagatggac
aagcggcttgcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgcgatcctgttgtgttaacttaccaggctgagcggatgccagaacagatcaggctaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggctttttgcctaccaatgacttaactcagcctacaggattcttggctcagcctatgaag
cagcaagcttgggctacagatgacgtagcacaaatctacgacaaatgtatgacagaactg
gagcagcacctgcagtccattccacataccctggccatgaatcctcaagctcaagcgttg
cgcagcctcttggaggctgtggtagtggctcgtaactcccgtgatgctattgctgcgctt
ggactactgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctatcgtgagtgtcatctgcttgtgctgaaggctctgcaggacggccgt
gcttatggatctccgtggtgtaataaacaaattacgaggtgcctgattgaatgcagagat
gagtacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatg
cagcagtacgaccttcacttggcgcagtcgatggagaatggcttgaactacatggctgtg
gcgtttgccatgcagttggtaaagatcctgttggtggatgagagaagcgtcgcccacgta
acagaggcagatctgtttcacacaattgaaacactcatgaggattaatgctcattccaga
ggaaacgccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagca
atgattgaccgtgctcatggaggtcccaatttcatgatgcattcaggaatttcccaagcc
tctgagtacgatgatccgccgggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcgggccgtgacagtaccaaagcattctcggcgttt
gttggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacagat
gacctgatcacccgctttttccgcctttgcactgaaatgtgtgttgaaatcagttatcgt
gctcaggccgagcaacagcacaaccctgctgccaaccccaccatgattcgagccaagtgc
taccacaacctggatgcctttgtgcgacttattgcgctgctagtgaagcactcgggggag
gcaaccaacacagtcacaaagatcaacctcctgaataaggttctcggtatcgttgtggga
gttcttctgcaagaccatgatgttcggcagagtgagtttcagcaacttccttaccatcgc
attttcatcatgttgctgttggaattaaatgctcctgagcatgtgctggagaccatcaac
ttccagacgctcacagctttctgtaacacatttcacatcctgaggcctacaaaagctcca
ggttttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctg
gcacatacaccacagcagaagggttggcctatgtatgcccagttactgatcgatcttttc
aagtacttggctcctttccttagaaatgtggaactcaccaaacctatgcaaattctttac
aagggcactctgcgtgtgttgctggtcctgttgcatgatttcccagaatttctttgtgac
tatcactatgggttctgtgatgtgatcccacctaactgtattcagctaaggaatctgatc
ctgagtgccttcccacggaacatgaggcttccagaccccttcacccccaatctaaaggtg
gacatgttaagtgagattaatattgctccacgaatactcacgaatttcactggagtgatg
ccacctcagttcaagaaagatttggattcctatctcaaaacccgttctccggtcactttt
ttgtctgacttgcgcagcaacctacaggtatcaaatgaacctggaaaccgctacaacatc
cagctgattaatgcactggtgctctacgtaggtactcaagctattgcgcacattcacaac
aaaggcagcacaccctctatgagcaccattacccactcagctcacatggacatcttccag
aatctggcagtagacctggacactgaaggccggtaccttttcttgaacgccatcgccaac
cagctgcgctatcccaacagtcacacccactacttcagttgcaccatgctgtacctgttt
gctgaggccaacactgaggcgatccaggagcagatcaccagggttctcttggaacgattg
attgtaaataggcctcatccctggggtctccttattactttcatcgagctgattaaaaac
ccagcgtttaaattctggaaccatgagttcgttcactgcgctccagaaattgagaagttg
ttccagtcagttgcacagtgctgcatggggcagaagcaggcccagcaagtaatggaaggg
actggtgccagttag
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integrated database retrieval system
