Rissa tridactyla (black-legged kittiwake): 128908322
Help
Entry
128908322 CDS
T09443
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtd03009
]
128908322 (IGHMBP2)
03012 Translation factors [BR:
rtd03012
]
128908322 (IGHMBP2)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128908322 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
128908322 (IGHMBP2)
Ribosome biogenesis [BR:
rtd03009
]
Eukaryotic type
Other ribosome biogenesis factors
128908322 (IGHMBP2)
Translation factors [BR:
rtd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128908322 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
NAT10_TcmA_helicase
ResIII
DEAD
nSTAND3
AAA_22
AAA_16
SLFN-g3_helicase
nSTAND_NTPase5
Flavi_DEAD
UvrD-helicase
AAA_25
DUF7205
AAA
T2SSE
ABC_tran
IstB_IS21
DAP3
UvrD_C_2
RL
AAA_33
PhoH
cobW
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
128908322
NCBI-ProteinID:
XP_054054249
LinkDB
All DBs
Position
4:complement(621351..666860)
Genome browser
AA seq
986 aa
AA seq
DB search
MAAEAAERHLELLREEREAELAQSRAWQESVSLKELQRRGVCLLKLQAANQRTGLYGRLL
ITFQPRKYDSDAELPCNSFGPGDIVGLYESAGQGDPLSTGIVTRVTSKAVTVAFEESRDG
MLSLDRESSYRLLKLANDVTYNRLKKALNALKQYHGGPASALIDVLFFSSEPSAFSETKP
LKLYNESLDASQREAVSFSLAQRELAIVHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPS
NVAVDNLVERLAGYKARILRLGHPARLLEPIQQHSLDAVLARGDNAQIVADIRKDIDQAF
AKSKKAQDRGERSHFLHEIKALRKELKEREESAMAAALTRASVVLATNTGASSDGPLKLL
PEDHFDLVVIDECAQALEAGCWVPLLRAPKCVLAGDHKQLPPTILSHKAAAKGLALSLME
RLIERYGEQIVKMLTVQYRMHQAIMQWASSEMYSGRLTAHPSVAQHLLRDLPGVASTEET
TVPLLLIDTAGCGLFELEVEDEQSKGNPGEVQLAALHIQALVEAGVKAQDIAVVAPYNLQ
VDMLREHLCHRYPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA
RRHVAVICDTRTVSNQAFLKRLVDYFSQHGEVRTAFEYLDNLVPENYAQESRGERQQGAK
LPAASGLKTQPPPGRKLKAAATKPECQKAEARFSPNTSGPGRERPGTKDGADRFKATLVA
FLESSETQLDFPPSLNSHDRMLVHLMAEEYGLQHLSTGEGRDRYISVRKKEPAEPSLPAA
APPGKQLPLPQPQHPHRETPVPAEPEGHSEGSGKVDLKTLHLERVQREKARREEAARKAQ
EPSASLQGSSRKKDKSQAKGKPAVKSGAGGVAEEDIDALISAAIKADNTCGFLRCKASVT
TLGQLCLHCNRRYCLSHHIPEVHGCGEKAKAQARQRISREGVLYPGSGSKDKSLDAARRA
QLQRRLDKKLSELTSQRKSKKKDKEK
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggcggcggagcggcacctggagctgctgcgggaggagcgggaggccgag
ctcgcccagagcagggcatggcaggaaagcgtctccctgaaggaactgcagcgcagaggc
gtctgcttgctgaaactccaggctgccaaccagagaaccggcctctacggacggctgctc
atcacctttcagcctagaaaatacgattcagacgccgagctgccctgtaacagttttggg
cctggggacattgtgggcctttatgagtcagctggccagggtgacccgctctccaccggc
attgtaacacgggtcacctccaaagccgtgactgtagcctttgaggaatctcgagatggc
atgctgagcttggaccgagagagctcttaccgcctgctgaaattagccaacgatgtcacc
tacaacaggctgaaaaaagctttaaatgcactaaagcagtatcacggcggtccagcctct
gctctgatcgacgtcctcttcttttcttctgagccgagcgcattcagtgaaacaaagcct
ctaaagctttacaatgagtcgctggatgcatcgcagagggaggccgtctccttctcactg
gcgcagagggagcttgccatcgtccatggaccacctggcacagggaagaccacaacacta
gtggagatcatcttgcaagctgtacagcaaggcctgaaagtcctgtgttgtgccccttcc
aacgttgctgtggacaacctggtggaaaggctggctggctacaaagcccgcatcctgcgg
ctcgggcaccctgctcgcctgctggagcccatccagcagcattccttggatgccgtcttg
gcccgtggtgacaatgcccagatagtggcggacatcaggaaggacatcgaccaggccttt
gcaaaatccaaaaaggctcaagacaggggagagcggagccactttctccatgagattaag
gcgctgagaaaggagctgaaagaacgagaagaaagtgccatggctgcagccctcacccgt
gccagtgttgtccttgctactaatacaggtgcttcctccgacggcccactgaagctgctt
cctgaagatcactttgacctggtggtgatagacgagtgcgcgcaggcgctggaagccggc
tgctgggtgcctctgctgagggctcccaagtgcgtcctggccggggatcacaagcagctt
ccccccaccatcctctctcacaaggctgctgccaagggccttgcgctcagcctgatggag
cgcctcatcgagaggtacggggagcagatcgtgaagatgctgacggtgcagtaccgaatg
caccaggccatcatgcagtgggcttcctcggagatgtacagcggccggctcactgctcac
ccatcagtggcccagcatttgctcagggacctgccgggcgtcgcctctacagaagagact
acagttcccctgttgcttatagacactgctggctgcggcctgtttgagctggaagtggaa
gatgaacagtctaaggggaatccaggcgaggtgcagctggccgctctgcacatccaagcc
ttggtggaagccggtgtgaaggcacaagacatcgctgttgtagccccctacaacctgcag
gtggacatgctaagagagcacctgtgccacaggtacccagagctggaaattaaatcagtt
gatggtttccaaggaagagagaaagaggcagtgatcctgtccttcgtgagatccaacagg
aaaggtgaggtgggctttcttgcagaagaccggcggataaacgtagcggtgacccgcgcc
cggcgccacgtggctgtcatctgcgacacccgcactgtcagcaaccaggcctttctgaag
cggctggtggattatttcagccagcacggggaggtacgcaccgccttcgagtacctcgac
aacctcgtgcccgaaaactacgctcaggagagccgcggcgagcggcagcagggtgcaaag
ctccccgcagcatctggcctcaaaacacagccgcctccggggaggaaactcaaagcagca
gcaaccaaaccagagtgtcagaaggcagaagcgcgtttctccccgaacacaagcggacct
gggagagagcgcccggggacaaaagacggtgccgacagattcaaggccacgctggtggcc
ttcctggagagcagcgagacgcagttggatttccccccatccctcaattctcacgatcgg
atgctggttcacctgatggcggaggagtacgggctgcagcacctgagcaccggggaaggg
agggaccggtacatcagcgttcgcaagaaagagcctgccgagccttcgctccctgccgcc
gccccccccggcaagcagctcccccttcctcagccgcagcatccccacagggaaactccc
gtccctgctgagcccgaaggacacagcgagggctcagggaaagtggacctgaaaaccctg
cacctggagagagttcagagggagaaagccagacgggaggaggcagcgaggaaggctcag
gagcccagtgccagcctccagggcagcagcaggaaaaaagacaaaagccaagccaaagga
aagccagcggttaagagcggagcaggcggcgtggcagaagaagatatcgatgctctgatt
tctgctgccattaaagctgacaacacctgcggcttcctccgttgcaaagccagcgttaca
accctgggacagctttgcctccactgcaacaggcgctactgcctcagccatcacatcccg
gaggttcacggctgcggggagaaggcgaaggcccaggcgcggcagaggatcagccgggaa
ggggttctctatcccgggagcggctccaaagacaagtccctggacgccgccaggagagcc
cagctccagcggcgcctggacaagaagctcagcgaactcaccagccagagaaagagcaaa
aagaaagacaaggagaaatga
DBGET
integrated database retrieval system
