Rana temporaria (common frog): 120917768
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Entry
120917768 CDS
T07929
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120917768 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120917768 (CNOT1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120917768 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120917768 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
120917768
NCBI-ProteinID:
XP_040185217
LinkDB
All DBs
Position
11:complement(142717639..142784257)
Genome browser
AA seq
2435 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQLEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSCNSDLRAFAAQFVKQKLPDLLRSYVDVDVSGSQEGGFQDIAIEV
LHLLLSNLLFGQKGAFGVGQEQIVAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
SDSGGITKTMMDSSLADFMQEVGYSFCSSVEECRNIIVQFGVREVTAVQVARVLGMMART
HSGLTDGISLQSISAPGSGIWSDGKDKNDGVQAHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHPGYLIRDSKGLQTVVYGIQRGLGMDVFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFC
FADYPCHAVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSYPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFVQACMTFLKRRCPSILGGMAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVVNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPLAAMASL
NIGGSAAPHTQTLPAFPPNLGSAFSTPQSPAKAFPPLTTPNQSTAFSGLSGLASQLPGGL
GTGSLTGMSTGGLGLPAVNTDPFGQRKLSTSGLSQPTFQQTDLSQVWPEANQHFTKEIDD
EANSYFQRIYNQPPHPTMSVDEENTTPVPTRMLTALEYEVLEMLQRFKDSNIKREREVFN
CMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSK
MYFFGIAALDRFKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSI
TTPGSIALSQAQAQAQAQAPAKAPLPGPVSTNTVTTSTATTSAKTVTITRPTGVSFKKDV
PPSINTTNIDTLLVATDQAERTVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEF
MPWVSQYLVMKRVSIELNFHSLYSNFMDALKHAEFNKMVLAETYRNIKVLLTSDKAAANF
SDRSLLKNLGHWLGMVTLAKNKPILHTDLDVKSLLLEAYMKGQQEMLYVVPFVAKVLESS
IRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLAIDLNDLKPGSLLKDK
DRLKSLDEQLSAPKKDVKQPEELLPSIPSANEYAIRTAGKLWASVEKQESDAVFTVNCFP
SATVTVPPPSTTCAATVPPQPQYSYHDIHVYSLAGIAPHITLNPTIPLFQTHPHLKQYVR
QAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAM
ITCREPLLMSIATNLKTSFATSMRAASPQQREMMEQAAAQVAQDNCELACCFIQKTAVEK
AGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEE
FARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCIAELEQHLHAIPPTLAMN
PQSQALRGLLEAVALARNTRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLK
ALQDSRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSMENG
LNYMAVAFAMQLVKILLVDERSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMDVL
RSNFEAMIERAQGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDST
KAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCY
HNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRI
FIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKASGFVYAWLELISHRIFIARMLA
HTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDY
HYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMP
PQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYSIQLINALVLYVGTQAIAHIHNK
GSTPSMSTITHSAHMDIFQNLAVDLDTEGNLSSQRFSRRDGRYLFLNAIANQLRYPNSHT
HYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHE
FVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGSGAS
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctaccttgtggacaactta
acgaagaaaaactaccgggccagccagctggaaatacaacatattgtgaatcggcacggt
ccggaggcagacagacacttgttacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagcggtaaagattttcatcagacgcaatttctgattcaggagtgtgcgtct
ctgatcaccaagcctaacttcatctccaccctctcgtacgccattgacaatccattgcac
tatcagaagagcctgaagccatctccccacctttttgcccagttgagtaaagttctgaag
ctcagcaaagttcaggaggtgatctttggcttggcccttctgaactcctgcaacagcgac
ctgcgggcctttgctgcacagtttgtgaagcagaagctccctgatctcttgcgttcctac
gttgacgtggacgttagtggcagccaagaaggtggattccaggacattgccatagaggtc
ttgcacctcctcctctccaatctcctttttggccagaaaggagcattcggggtgggacag
gagcagattgtggcatttcttaaaaccctgcgcagagattttccccaggagcgctgtccg
gtggtgcttgcaccactcctctaccctgaaaaacgggacatcctaatggaccggattttg
tctgattctggcgggataaccaagaccatgatggacagctccttggcagacttcatgcag
gaagtgggttacagcttctgttccagtgtggaagaatgccgcaatatcattgtccagttt
ggtgtccgggaagtgactgcggtgcaggtcgctcgggtcctggggatgatggcacggacg
cattctgggctcacagatggaatctccttacagtcgatctccgcccctggcagcggcatc
tggagtgatggcaaggacaagaacgatggcgtgcaggctcacacttggaacgtggaggtt
ctcattgatgtagtaaaagagctgaatcccaacctgaacttcaaggaagtgacatacgag
ctggatcatccaggatacctgatacgtgacagcaaggggctccagactgtagtatatggc
atccagagggggcttggcatggatgtatttccagttgatctcatttataggccttggaaa
catgcagagggccagctttccttcatccagcattccttgatgaatccggacgtcttttgc
tttgcggactacccttgccatgctgttgcaactgacatcctaaaggctccaccagaagat
gacaatcgggagatagctacatggaaaagtttggatctgatagagtccctgcttcggctg
gctgaggtgggccaatatgaacaggtcaaacagctcttcagctaccccatcaaacactgt
ccagacatgctggtcctggctctgctccagatcaacacttcctggcataccctaagacac
gagctcatctctactctgatgccgatctttctgggtaaccatccaaactccgccatcatt
ttgcactatgcatggcacggccagggccagtctccctccatccgccagctgatcatgcat
gccatggcagagtggtatatgcgaggtgagcagtatgatcaggcccgcctgtctcgtata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctgaacggtactccatttgcc
tttgttattgatcttgctgcacttgcttcacgccgggaatacctcaaactggacaaatgg
ctgacggataaaatacgggaacatggggagccctttgtccaagcctgcatgactttcctc
aaacggcgctgtccttccatactaggcggcatggctcccgagaaagaccaaccgaaaagc
gcacagcttcctcctgaaactctggccacgatgctagcatgccttcaggcttgtgcaggg
agtgtgtcccaggagctttctgaaaccatccttaccatggtggccaactgcagcaatgtg
gtgaacaaggcacggcagcctcctccgggagttatgccgaaaggtcgtcctcccagtacg
agcagtctggacgccatttctccggtacagatcgaccctttggctgcaatggcctctctc
aacattggtggttctgctgctcctcacacacagacccttccagctttccctcccaatctg
ggctcggctttcagcacgccacagtcaccagccaaggcatttccccctctcacgactcca
aaccaatctactgcttttagtggcctcagtggtctcgcctcgcagctgccaggtggactt
ggaacaggcagtctaactggaatgagcactggaggcctgggccttcctgctgtgaatact
gacccgtttggacagaggaaactcagcacttcagggctcagtcagccaacattccagcag
acggacctgtctcaggtatggccagaagcaaaccagcactttactaaagaaattgatgat
gaagcaaacagctacttccagcgtatctacaaccagcccccgcaccccacaatgtcggtg
gatgaggagaacaccacccccgttccaaccaggatgctcactgctcttgaatatgaggta
ttggaaatgctgcagaggtttaaggactccaacataaagcgggagcgtgaagtcttcaac
tgcatgctgcgcaatttgtttgaagagtatcgtttcttccctcagtacccagacaaggag
ttgcatattaccgcctgtttgtttggtggcatcattgaaaaaggactagtgacatacatg
gctttaggactggcactgcgctatgtactggaagcactgcgcaaaccttatggatccaaa
atgtatttctttggcatcgctgcactagataggttcaaaaacaggttgaaggactatcct
cagtactgtcagcacttggcttccatcagtcactttattcagttccctcatcatttgcag
gagtacatagagtatggtcagcagtctcgggaccctccggtcaagatgcagggatctatc
accaccccaggcagtattgcactttcacaagcccaggctcaggcacaagcccaggcccct
gccaaagctcctcttcctggccccgtaagcaccaatacagttaccacatctaccgccaca
acctcagccaaaactgttaccatcaccagacccactggcgtcagtttcaagaaggatgta
ccgccatccatcaacactaccaacatagacacacttctagtggctactgaccaggcagag
agaactgtggaaccacctgagaatgtgcaagagaaaatcgccttcatattcaataacctg
tcgcagtccaacatgacacagaaggtggaagagttgaaggaaactgtaaaagatgagttt
atgccttgggtgtctcaatacctggtgatgaagagggtgagcatcgagctgaactttcac
agtctgtactccaacttcatggacgctctgaagcatgcagaattcaacaagatggtttta
gcagagacgtacaggaacattaaggtgttgttgacgtctgacaaagctgctgctaatttc
tctgaccggtctttgttgaagaacctgggccactggctaggcatggtcaccctggccaag
aacaaacccatcctacacacagacctggatgtgaagtcgctgctgttggaggcctatatg
aagggacagcaggagatgctctacgtggtgccttttgttgctaaagtcttggagtcaagt
atccgaagtgtggtttttcgacctccaaatccatggacaatggctattatgaatgttttg
gcagagcttcaccaagagcatgatttgaagcttaatctgaagtttgagattgaggtcttg
tgtaaaaatctagccattgacctcaatgacttgaagcccgggagtctccttaaagacaag
gaccgtctaaagtctctggatgagcagctttctgccccaaagaaagatgtgaaacagcca
gaggaactgctgcctagcatccccagcgccaacgagtatgccatccgcacagcaggcaag
ctctgggcttcggttgagaaacaggagtctgacgctgtcttcacagttaattgtttcccc
tcagctacggtgacagtcccaccccccagcaccacgtgtgctgcaacagttcctccacag
ccgcagtacagctaccatgatatccatgtctattcgcttgctggtatcgcaccccacatc
acactcaatccaacaatccctctcttccaaacccacccccacctcaagcaatatgtgcgg
caggccattgaacgggctgtgcaggagcttgtacatcctgtggttgaccgttccataaag
attgcaatgaccacctgtgagcagatcgtgcggaaggactttgcactggattcagaggag
tctcgaatgcgggtggcggctcaccacatgatgcgcaatctgactgctggcatggccatg
ataacttgcagagaacctctgctcatgagtatagctaccaatctgaaaaccagctttgcc
acctcaatgcgggctgcctctccccagcagcgcgagatgatggaacaggctgctgctcag
gtggctcaggataactgtgagctggcttgctgcttcatccagaagacagcagtagagaag
gctggaccagaaatggacaagaggttggccacggaatttgaattacgaaagcatgccagg
caggagggacgacgatattgtgatcccgttgtactgacctaccaggcggagcggatgccg
gagcagatccgactaaaggtcggaggtgtggaccccaaacagctggctgtttatgaggaa
tttgcacgcaatgttcctggcttcctccccaccaatgacttgactcagcccacgggattc
ctggcgcaacccatgaagcaacaagcctgggccacagacgacgtagcacagatttatgac
aagtgtatcgctgaactggagcaacatcttcatgccatcccacccacacttgccatgaac
ccgcagtctcaggccctgcgaggtctgctggaagctgtggcactggcccggaacaccaga
gatgccattgctgctctggggctgctgcaaaaagctgtggaaggacttttggatgccact
agcggtgctgacgcggaccttctgctcagatatcgggaatgtcatttgctcgtcctgaaa
gctctgcaggacagccgggcctatggttctccttggtgcaacaagcagatcaccagatgt
ctgattgagtgtcgggatgagtacaagtacaatgtggaggctgtagagcttctgattaga
aaccatcttgtcaacatgcagcagtatgatgtccacctggcacagtcaatggaaaacggg
ctgaactatatggccgtggccttcgctatgcagcttgtgaagatcttgcttgtggatgag
cgaagcgtgagtcatgtgacggaggcagagtttttccacaccatagaaactcttatgcgt
atcaatgcgcactcaaggggcaatgcccctgaaggacttccgcagctgatggacgtgctc
cgctctaattttgaggccatgattgaacgggcccagggtgggccaaacttcatgatgcat
tctgggatatcccaagcatccgagtatgacgatcctccaggactccgggaaaaggcagag
taccttctgagagaatgggtcaatctgtatcattcggctgctgccggacgggacagtaca
aaggccttttctgcatttgttggccagatgcaccagcaaggaatcctaaagaccgatgac
ctcatcacccggttcttccgcttgtgtacagagatgtgtgtggaaataagctaccgtgct
caggctgagcagcagcacaatccagctgccaaccctacgatgatccgagcgaagtgctac
cataacctggacgcctttgtccggctgatcgctctgttagtcaaacactctggagaagcc
accaataccgtcaccaagatcaatcttctcaacaaagttctcggtattgtagtgggggtt
ttgctccaggatcatgaagtgaggcagagtgagttccagcagcttccataccatcgcatc
ttcattatgctactgctggaattgaatgcaccagaacatgtgttggaaacaatcaacttc
cagaccctcactgccttctgtaacaccttccacatcctccggcccaccaaagcatccggc
ttcgtctacgcatggctagagctgatttcccaccgtatctttattgcacggatgttggca
cacactccccagcagaaggggtggccaatgtatgcccaactactgatcgacctctttaaa
tatctggcaccatttctccgaaatgtggaactcaccaaacctatgcaaattctgtacaag
ggcacgctgcgtgtgctgctggttctgctccatgacttcccagagttcctttgtgattat
cactatggcttctgtgacgtcatcccacccaattgtatccagctgaggaatctaatcctg
agtgccttcccccgaaacatgagacttccggaccccttcacccccaacctcaaggtggac
atgttgagtgagattaacatcgctcccagaatcctcacaaacttcaccggagtgatgcca
ccgcagttcaagaaagacctggactcctacctgaagactcgctcaccagtgaccttcctg
tcggagctgcgcagcaatttgcaggtctccaatgagcctggaaaccgttacagcattcag
ctcatcaatgcattggtcctttatgttggcacgcaggccattgcacacatccacaacaaa
ggcagcacgccatccatgagcaccatcacccactctgcccacatggacatcttccagaac
ctggcggtggacctggacactgaaggtaatctatcttcacaacgtttctcccgtcgtgat
gggcgctaccttttcctgaatgccatcgccaaccagctgcggtaccccaacagccacact
cactactttagctgcaccatgctgtacctctttgcggaagccaacactgaggccatccag
gagcagatcactagggtcctgttggagcgactgattgtgaacagaccacatccgtggggt
cttctcatcacctttattgagctgatcaaaaatcctgctttcaaattctggaatcatgaa
tttgtgcactgcgctccggagattgagaagttgttccagtcggtggctcagtgctgtatg
ggacagaagcaagctcagcaggtgatggaaggttccggtgccagctag
DBGET
integrated database retrieval system
