Ruoffia tabacinasalis: VQP54_00690
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Entry
VQP54_00690 CDS
T10899
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
rtf Ruoffia tabacinasalis
Pathway
rtf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VQP54_00690 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtf03019
]
VQP54_00690 (rny)
Messenger RNA biogenesis [BR:
rtf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VQP54_00690 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_NusA_2nd
KH_KhpA-B
EAD2
Motif
Other DBs
NCBI-ProteinID:
WWL40479
LinkDB
All DBs
Position
135383..136942
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AA seq
519 aa
AA seq
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MDFMSIAFAIVALIVGIIIGFLIKKVSDNKRIEGAKANAEVIIDDAIKQAQNLKREALFE
AKEENLKYRNEIEAELKERRNEVSRSENRLIQKEENLDQKGNNLDKRELNIESKEDDLNK
RLQSVTDKEARVNEIIQQQKDELERVAALSRDDARELIIDETKDGLAQDIAIMVRDAEQQ
AKDEADRNAKNIILQAIQRTSTDIVTDNSVSVVQLPNDDMKGRIIGREGRNIRTFESLTG
IDLIIDDTPDTVVLSGFDPIRRQIAKIALEKLIQDGRIHPARIEEMVERARKEVDEKIRE
VGEEATFELGIHSLHPDLIKIIGRLAYRTSYGQNVLKHSIEVAKLTSYMAGELGEDVVVA
KRAGLLHDLGKALDNEIEGTHVEIGTEIAKRYKESDVIINAIASHHGDTQPTSMISVLVA
LADAFSAARPGARSESLENYIRRLEQLEEISTSFDGVSHAYAIQAGREVRVAVRPDKIND
AQAAKVAHDIRKRVESEMNYPGNIKVTVIRETRSVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggactttatgtcaatcgccttcgcgatcgttgctttaatagttggaattataatcggc
tttttaatcaaaaaagtgtcagacaataaacgtattgagggtgcgaaagcaaatgctgaa
gtcattattgacgatgcaattaaacaagctcaaaatcttaaacgagaagcgctattcgaa
gcgaaggaagaaaatctaaagtaccgtaatgagattgaggcggaattaaaagagcgtcgc
aatgaagtcagtagatccgagaatcgtttaattcaaaaagaagaaaatttagatcaaaaa
ggtaataatttagacaaaagagaattaaatattgaatctaaagaagatgatttgaacaaa
cgactacaaagtgttactgataaagaagcaagagtgaatgaaataattcaacaacaaaaa
gatgaattagaacgtgtcgcagcattgtctcgagacgatgcaagagagttaatcattgat
gaaacaaaagatggtttagctcaagacatagcaataatggttcgtgatgcagagcaacaa
gctaaagacgaagcagaccgtaatgcgaagaatattatactacaagcaattcaaagaaca
tccaccgatattgtcactgacaattcagtgagtgttgttcaattacctaacgacgatatg
aaaggtcgtattataggtagagaaggtagaaatattcgaacattcgaaagcttaactggt
atcgatttaattattgatgatacaccagatactgtcgtattaagtggatttgatccaatt
cgacgccaaattgcaaaaattgctttagaaaaattaatccaagatggacgaattcatcct
gctcgaattgaagaaatggttgaaagagctagaaaagaagtcgatgaaaaaattcgagaa
gtcggtgaagaagctacatttgaattaggcattcattcactgcatccagacttgattaaa
atcattggtcgattagcttatcgaactagttatggtcaaaacgtcctaaaacattccatc
gaagtagctaaattaacgagctatatggcgggtgagttaggtgaagacgttgtcgtagct
aaacgagctggtttattacatgatttaggtaaagcattagataatgaaatcgaaggtaca
cacgttgagattgggacagagattgcaaaacgttataaagaatcagacgttattattaac
gcaattgcttcccatcatggagatactcaaccaacttcaatgatatcagtgttagttgct
ttagcagatgcattttctgcagcaagacctggtgctagaagtgaatcacttgagaattat
atacgtcgacttgaacaattggaagaaatttcaacaagttttgatggagtctctcatgct
tacgcaattcaagctggacgagaagtcagagtagcagttagaccagacaaaatcaatgac
gcacaagcggctaaagtggctcatgacattcgaaaacgtgttgagtctgaaatgaattat
ccaggaaacattaaagtaacggtaattcgcgaaacaagatctgtcgaatatgccaaataa
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