Remersonia thermophila: 98124387
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Entry
98124387 CDS
T10833
Symbol
VTJ83DRAFT_3372
Name
(RefSeq) hypothetical protein
KO
K18752
transportin-1
Organism
rthe Remersonia thermophila
Pathway
rthe03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rthe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
98124387 (VTJ83DRAFT_3372)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rthe03019
]
98124387 (VTJ83DRAFT_3372)
03009 Ribosome biogenesis [BR:
rthe03009
]
98124387 (VTJ83DRAFT_3372)
Messenger RNA biogenesis [BR:
rthe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
98124387 (VTJ83DRAFT_3372)
Ribosome biogenesis [BR:
rthe03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
98124387 (VTJ83DRAFT_3372)
Pre-60S particles
98124387 (VTJ83DRAFT_3372)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_EF3_N
HEAT_GCN1
HEAT_2
TOR1L1_N
TPR_DNAAF5
Cnd1
TPR_IPO5
Vac14_Fab1_bd
TPR_IMB1
MMS19_C
HEAT_GCN1_C
HEAT_MROH2B_C
Arm
VPS15-like_hel
RTP1_C1
IBN_N
Exportin-5
Nol11_C
Motif
Other DBs
NCBI-GeneID:
98124387
NCBI-ProteinID:
XP_070867250
JGI:
Remth1_3372
LinkDB
All DBs
Position
3:join(1983093..1983194,1983311..1985944,1986046..1986147)
Genome browser
AA seq
945 aa
AA seq
DB search
MDWQPNQESLGTLAVCLRDSLSGFNKAVQKQAEIMLSQAKANPDINNYLAYIFSSPAPPA
GVALSPTDWHLVRSSAAIMLKNNIKANSKRIPEGSLSLVKLAVLMGIQDGNSQIRSYAGN
IATEIVRAGGLYSWPELLPELLKLLSNETGAVSNEAQEGAMAAMAKICEDNAKLLERDHN
GQRPLNVLLPKFIQATRSPLPRVRANALTAINIFTPKKTQAMLNHIDDLLQHLFLLAEDP
NTDVRRQVCRAFVRLVHSRPDKLLPHLSGLVDYIIAQQKSDDEDLACEAAEFWLSIGEHD
DLWRNLEPYIQKIIPVLLDCMVYSPEDIAILGGDSDDEDEEDRAEDIKPQFAKKNLQRGA
AGDGQGEGAQNGHAFEKLASMEEDDDDLEEGEVEDSDDDEGDENPDEKWTLRKCSAAALD
VFASDFGQPVFTSILPYLQINLKHQDWPQREAAVLALGAVAEGCMNVVVPHLPELIPYLI
TLLDDPEPVVRTITCWTLGRYSAWAAHLSDPAQKQTYFVPLIDGILRKMVDKNKKVQEAG
ASAMANLEEKAGKHIEPFCGPIVQQFVLCFSKYKDKNRWILYDCVQTLAEHIGPVLARPE
LRDQLMPALMDRYAKVPDQSREVFPLFECLSYVAIALGDAFTPWAEAVFLRCVNIIHQNL
EQTHAALNNPEFDQPEKDFLVTSLDLLSAIIQALDDAKAAKLVENSQPAFFELLACCMQD
PADEVQQSAYALLGDCAKFVFEQLRGALPSLLPILVRRLDLDSVLDEEVDGVFGVVNNAC
WSVGEIALQYKKGMEPFVHEMLEHFVEMLSNPGVPPGVSENAAIALGRLGIDNYDQLAPH
LSKFSEEFLSTLEDVDASEEKATALKGFAIVVAQNPQAMEKDLLRFFSAIARYRDLKLQN
PIKQELHDVFQNVLTIYRQLIPQFENFVAQLPLQDQQSLRATYVF
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggattggcagcctaaccaggagtccctggggactcttgcagtctgcctccgggactcc
ctgagcggcttcaacaaggcggtgcagaagcaggccgagattatgctctcgcaagccaag
gcgaaccccgacatcaacaactatctggcctacatcttctcgagccccgcgccgcccgcc
ggcgtggcgctatcccccaccgactggcacctggtgcgctcctccgccgccatcatgctc
aagaacaacatcaaggcgaacagcaagcgcatccccgaaggcagcctgtcgctggtgaag
ctggccgtcctgatgggcatccaggacggcaactcgcagatccgcagctatgccggcaac
atcgcgaccgagatcgtccgcgccggcggcctctacagctggcccgagctgctgcccgag
ctgctcaagctgctcagcaacgagacgggcgccgtgtccaacgaggcccaagaaggcgcc
atggccgccatggccaagatctgcgaggacaacgccaagctcctcgagcgcgaccacaac
ggccagcggcccctcaacgtcctcctccccaagttcatccaggccacccgcagccctctg
cccagggtgcgcgccaacgccctgaccgccatcaacatcttcacccccaagaagacccag
gccatgctcaaccacatcgacgacctgctgcagcacctgttcctgctcgccgaggacccc
aacaccgacgtgcgccgccaggtctgccgcgccttcgtccgcctggtccactcgcgcccg
gacaagctgctgccccacctgagcggcctcgtcgactacatcatcgcccagcaaaagagc
gacgacgaggacctcgcctgcgaggcggccgagttttggctgtcgatcggcgagcacgac
gacctgtggcgcaacctcgagccctacatccaaaagatcatccccgtgctcctcgactgc
atggtctacagccccgaggacatcgccatccttggcggcgattccgacgacgaggacgag
gaggaccgcgccgaggacatcaagccgcagttcgcaaagaagaacctccagcgcggcgcg
gccggcgacggccagggcgagggcgcccagaacggccacgccttcgagaagctggcgagc
atggaggaggacgacgacgacctggaggagggcgaggtcgaggactcggacgacgacgag
ggcgacgagaacccggacgagaagtggacgctccggaagtgctccgccgccgccctggac
gtcttcgcctccgactttggccagcccgtcttcacctccatcctcccctacctgcagatc
aacctcaagcaccaggactggccccagcgcgaggccgcggtgctcgccctcggcgccgtc
gccgagggctgcatgaacgtcgtggtcccccacctgcccgagctcatcccctacctcatc
accctgctcgacgaccccgagcccgtcgtccgcacaataacgtgctggaccctcggccgc
tactcggcctgggctgcccacctgtccgatccggcccaaaagcagacctacttcgtgccc
ctcatcgacggcatcctgcggaagatggtggacaagaacaagaaggtccaggaggcgggc
gcctccgccatggcgaacctcgaggagaaggccggcaagcacatcgagcccttctgcggg
cccatcgtccagcagttcgtcttgtgcttctccaagtacaaggacaagaaccgctggatc
ctctacgactgcgtccagaccctcgccgagcacatcggccccgtcctggcccggcccgag
cttcgcgaccagctcatgcccgccctgatggaccgctacgccaaggtgcccgaccagtcg
cgcgaggtgttcccgctcttcgagtgcctctcgtacgtcgccatcgccctcggcgacgcg
ttcaccccgtgggccgaggccgtcttcctccgctgcgtcaacatcatccaccagaacctc
gagcagacccacgccgccctcaacaacccggagttcgaccagcccgagaaggacttcctc
gtcaccagcctcgacctgctgagcgccatcatccaggccctcgacgacgccaaggccgcc
aagctggtcgagaacagccagcccgccttcttcgagctgctcgcctgctgcatgcaggac
cccgccgacgaggtgcagcagtcggcgtacgccctgctcggcgactgcgccaagtttgtg
tttgagcagctgcgcggcgcgctgccgtccctcctgcccatcctcgtccggcgcctggac
ctggacagcgtgctggacgaggaggtggacggcgtctttggcgtcgtgaacaacgcctgc
tggagcgtcggcgagatcgcgttgcagtacaagaagggcatggagcccttcgtgcacgag
atgctcgagcatttcgtcgagatgctctccaacccgggcgtgcctccgggcgtcagcgag
aacgccgccatcgcgctcgggcggctgggcatcgacaactacgaccagctcgccccgcac
ctgtccaagttctcggaggagttcctgagcacgctcgaggacgtcgacgcgtccgaggag
aaggcgacggccctcaaggggttcgccatcgtggtggcgcagaacccgcaggccatggag
aaggatctgctgcgcttcttctccgcgatcgcgaggtaccgcgatttgaagctgcagaat
cccatcaagcaggagctgcacgacgtgttccagaatgtgctcacaatctaccgccaactg
attccccagtttgaaaactttgtcgcgcagctcccgctccaagaccagcagtctttgagg
gcgacgtatgtcttctga
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integrated database retrieval system
