Rufibacter tibetensis: DC20_06815
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Entry
DC20_06815 CDS
T04099
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
rti
Rufibacter tibetensis
Pathway
rti02020
Two-component system
rti02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rti00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DC20_06815
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DC20_06815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rti03021
]
DC20_06815
Transcription machinery [BR:
rti03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DC20_06815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
LacI
SF3b1
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
ALJ01282
UniProt:
A0A0P0C7N4
LinkDB
All DBs
Position
complement(1754448..1755929)
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AA seq
493 aa
AA seq
DB search
MQRLDLKQLLSQKLSPQQIQFIKLLQVPTAELEARIKEELEMNPALEEGDVADEPATDND
DSNSDADEDFDNTEDDFAEDEARRDDDDVDLGDYLNDDEIAGYKMQGDGPGDEEDREMPI
AFTGSLTDALMDQLGFLNLDPKQMAIGEQLIGSIDQDGYIRRELQAISNDLAFSQNIDAS
EQEIEDVLRRIQAFDPPGIAARDLQECLLLQLERREPDEITEVAEQIIHDCFDEFTKKHY
AKIQQKLELEDYELKAAIDLILKLNPKPGGTGGATRVQYVIPDFIITNEDGELQLSLNAR
NAPDLRISRSYADMFDAYDKGSKKDKKLKETVTFVKQKLDAAKWFIDAIKQRQNTLLRTM
EAILRRQYDYFLEGDESKLKPMILKDIAEDIGMDISTVSRVANSKSVQTEFGIIPLKFFF
SEGIATDAGEDASSREVKAILKDIIDAENKAKPLSDDKIEKMLNEKGYNIARRTVAKYRE
QLNIPVARLRKEL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgcagagactcgacttaaaacagcttttatcccagaaattatcgccgcagcagatacag
ttcatcaagttgctgcaggtgcctaccgctgagttggaggcccgcatcaaagaagaactg
gagatgaaccccgctctggaagaaggggatgtcgctgatgagcctgcgaccgataacgat
gattctaacagtgatgccgatgaagatttcgacaacaccgaggatgactttgccgaagat
gaagcccgccgagacgatgacgatgtagacctgggcgattacctcaatgatgacgagata
gccgggtacaagatgcagggcgacgggcccggcgacgaggaagaccgtgaaatgcccatt
gccttcaccggctctctcaccgatgcactcatggaccaattagggttcctgaacctggat
cccaagcagatggccatcggcgagcagctaattggttctattgatcaggacggctacatt
agacgtgaactacaggctatctccaatgatctggcgttttcgcagaacatagatgcctct
gagcaggagattgaagacgtgttgcgccgcattcaggcgtttgacccacccggcattgcc
gcccgtgacctgcaggagtgcctcttgttgcaactggaacgccgtgaaccagatgagatc
acagaagtggccgagcagatcatccatgactgctttgacgagttcaccaagaaacattat
gccaagattcagcagaagctggagctggaagattatgagttgaaggcggccattgacttg
atattgaagctgaaccctaaacccggcggaaccggcggtgccacccgggtgcagtacgta
ataccagacttcattatcactaatgaagacggcgagctgcaattgtcgctaaacgcccgc
aatgccccagacctgcgcatttctcgctcctatgcagatatgtttgacgcctatgacaaa
ggctcaaaaaaggacaagaagctgaaggagacggtcacgtttgtgaagcagaaactggat
gccgccaaatggtttattgatgctattaagcagcgccagaacacgcttttgcgcaccatg
gaagccattctccgccgtcagtacgactatttcctggagggtgatgaaagcaagctgaag
ccgatgatcctgaaagacattgccgaagacataggtatggacatttctaccgtaagccgc
gtggccaacagcaaaagtgtgcaaacggagttcgggattattccgctgaagttcttcttc
tcagaaggcatcgccaccgatgccggtgaagacgccagtagccgtgaggtgaaagccatt
ctcaaagacatcattgacgctgaaaacaaggccaagcctctgtctgatgacaagattgag
aagatgctcaacgagaaaggctacaacatcgcccgccgcaccgtagccaagtaccgtgag
caattgaacataccggtagcccgcctacggaaagaactgtag
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