Rathayibacter tritici: A6122_0556
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Entry
A6122_0556 CDS
T04388
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rtn
Rathayibacter tritici
Pathway
rtn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6122_0556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtn03021
]
A6122_0556
03400 DNA repair and recombination proteins [BR:
rtn03400
]
A6122_0556
Enzymes [BR:
rtn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6122_0556
Transcription machinery [BR:
rtn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6122_0556
DNA repair and recombination proteins [BR:
rtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6122_0556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AND15713
UniProt:
A0A160KQQ8
LinkDB
All DBs
Position
619127..622618
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAASTATTTSPKNGRGASRLSFAKISDTLTVPDLLALQTESFDWLVGSEAWKTRVAEAK
AAGREDLPANSGLDEIFEEISPIEDLSETMQLSFANPYLEPEKYTIEECKERGKTYAAPL
YVEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERQQEK
TSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILEQFA
GYESIELTLEKDNILTKEDALRDIYRKLRPGEQVAAEAARALLDNFYFNSKRYDLAKVGR
YKINRKLGIDKALSDSVLTVEDIIATIKYLVALHDGRTALPGVRDGESVELRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRKVVDGTVTSQIDYLTASEEDEYLVAQANAPLTPDF
RFAEGKVLVRPKGGEVELVDAERVHYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLRSESPVVGTGMEGFAAIDAGDVITADKAGVVQEVSADSVTVQLDEGGTQTYFL
RKFDRSNQGTSYNNRVVVSAGERLEVGEVVADGPATENGELALGKNLLVAFMPWEGHNFE
DAIILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIGVKV
FDAQDGDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGT
PVDIVLNPLGVPGRMNFGQVLEIHLGWIAKQGWKVDGQPEWAARLPEHAREAAPGTKVAT
PVFDGAAEEELAGLLDSTTPTRDGERLIGSSGKTQLFDGRSGEPFPDPVSVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD
DILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEV
YRAAEELGINISSRFESSSVDDI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgtccaccgcgaccaccacctcacccaagaacggacgcggagcttcgcgt
ctctcgttcgccaagatcagcgacaccctgaccgttccggatctgctcgcgctgcagacc
gagagcttcgactggctcgtcggctcggaggcgtggaagacgcgcgtcgccgaggcgaag
gccgccggccgggaggatctccctgccaactccggcctcgacgagatcttcgaggagatc
tccccgatcgaggacctcagcgagacgatgcagctgagcttcgcgaacccgtacctcgag
cccgagaagtacacgatcgaggagtgcaaggagcgcggcaagacctacgctgctccgctg
tacgtcgaggccgagttcatgaatcacctcaccggtgagatcaagactcagacggtcttc
atgggcgacttccccctgatgaccgagaagggcacgttcatcatcaacggcaccgagcgt
gtcgtcgtgtcgcagctcgtgcgcagccccggcgtctacttcgagcgccagcaggagaag
acgtccgataaggatatctactcggcacgtgtcatcccgagccgcggggcctggctcgag
ttcgagatcgacaagcgcgaccaggtgggcgtgcgcatcgaccgcaagcgcaagcagtcg
gtcaccgtgttcctcaaggctctgggcctgacgagcgaggagatcctcgagcagttcgcc
ggctacgagtcgatcgagctgaccctcgagaaggacaacatcctcaccaaggaggacgcg
ctccgcgacatctaccgcaagctccgtccgggcgagcaggtcgcggccgaggccgcccgt
gcgctgctggacaacttctacttcaactccaagcgctacgacctcgcgaaggtcggccgc
tacaagatcaaccgcaagctcggtatcgacaaggcgctgtccgactcggtgctcacggtc
gaggacatcatcgcgaccatcaagtacctggtcgccctgcacgacggccgcaccgccctc
cccggcgtgcgcgacggcgagtcggtcgagctgcgtctggacgtcgacgacatcgatcac
ttcggcaaccgccgcattcgcgcggtcggcgagctgatccagaaccaggtccgcacggga
ctgtcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggcgatc
actccgcagaccctgatcaacgtgcgcccggtcgtcgcggcgatcaaggagttcttcgga
acgagccagctctcgcagttcatggaccagaacaacccgctcgcgggtctgacccacaag
cgccgcctgtcggcgctgggccccggcggtctctctcgtgagcgcgccggcgtcgaggtc
cgtgacgtccacccctcgcactacggccgcatgtgcccgatcgagaccccggaaggcccg
aacatcggcctgatcggatcgctcgcgtccttcgcgcgcatcaactcgttcggcttcatc
gagaccccgtaccgcaaggtcgtcgacggcacggtcacgtcgcagatcgactacctcacc
gcgtccgaggaggacgagtacctggtcgcccaggcgaacgcccccctcacgcccgacttc
cgcttcgcggagggcaaggtcctggtccgccccaagggcggagaggtcgaactcgtcgat
gccgagcgcgtccactacatggatgtctcgccgcgtcagatggtgtcggtcgcgacctcg
ctgatcccgttcctcgagcacgacgacgcgaaccgtgcgctcatgggcgcgaacatgcag
cgtcaggccgtcccgctgctgcgcagcgagtcgcccgtcgtcggaaccggcatggagggc
ttcgcggccatcgacgccggagacgtcatcaccgccgacaaggccggtgtcgtccaggag
gtctccgccgactccgtcaccgtccagctggacgagggcggaacgcagacctacttcctc
cgcaagttcgaccgctccaaccagggcacctcgtacaacaaccgcgtggtcgtctcggcc
ggcgagcgcctcgaggtcggcgaggtcgtcgccgacggtcccgcgaccgagaacggtgaa
ctcgcgctcggcaagaacctgctcgtcgcgttcatgccgtgggagggtcacaacttcgag
gacgcgatcatcctcagccagaacctggtcaaggacgacgtcctctcctcgatccacatc
gaggagtacgaggtcgacgcccgcgacaccaagctcggcaaggaggagatcacccgcgac
ctccccaacgtcagcccggagctcctggccgacctggacgagcgcggcatcatccgcatc
ggcgccgaggtccgccccggcgacatcctcgtcggcaaggtcacgcccaagggcgagacc
gagctctcggccgaggagcgcctgctccgcgcgatcttcaacgagaagagccgcgaggtc
cgcgacacatcgctgaaggtgccccacggcgagcagggaacgatcatcggcgtcaaggtg
ttcgacgcgcaggacggcgacgacgagctcggctcgggcgtcaaccagcgcgtggtcgtc
tacatcgcccagaagcgcaagatcaccgagggtgacaagctcgccggtcgccacggcaac
aagggcgtcatctcgaagatcctgccggtcgaggacatgcccttcctcgccgacggcact
ccggtcgacatcgtcctcaacccgctcggcgtccccggccggatgaacttcggccaggtt
ctcgagatccacctggggtggattgcgaagcagggctggaaggtcgacggccagcccgag
tgggccgcgcgcctgcccgagcacgctcgcgaggcggcgcccggcaccaaggtcgcgacc
ccggtcttcgacggtgcggcggaggaggagctcgccgggctcctcgactccaccactccg
acccgcgacggcgagcgcctgatcggctcgtccggcaagacgcagctgttcgacggccgc
tccggggagcctttcccggacccggtctcggtcggctacatgtacatcctgaagctgcac
cacctcgtcgacgacaagatccacgcgcgctcgacgggcccgtactcgatgatcacccag
cagccgctcggtggtaaggcgcagttcggtggacagcgattcggcgagatggaggtgtgg
gccctcgaggcctacggagcggcttacgccctccaggaactcctcaccatcaagtcggac
gacatcctcggccgcgtgaaggtgtacgaggccatcgtcaagggtgagaacatccaggag
ccgggcatcccggagtccttcaaggtcctcatcaaggagatgcagtcgctgtgcctgaac
gtcgaggtcctctcggccgacggcaccgcggtcagcctgcgcgacaccgatgacgaggtc
taccgcgccgcggaagagctcgggatcaacatctcctcccggttcgagtcgtcctcggtc
gacgacatctga
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integrated database retrieval system
