Ruminococcus torques: RTO_14660
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Entry
RTO_14660 CDS
T02606
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rto
Ruminococcus torques
Pathway
rto03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RTO_14660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rto03021
]
RTO_14660
03400 DNA repair and recombination proteins [BR:
rto03400
]
RTO_14660
Enzymes [BR:
rto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RTO_14660
Transcription machinery [BR:
rto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RTO_14660
DNA repair and recombination proteins [BR:
rto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RTO_14660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF6503
Motif
Other DBs
NCBI-ProteinID:
CBL26075
UniProt:
D4M4B3
LinkDB
All DBs
Position
1511955..1515659
Genome browser
AA seq
1234 aa
AA seq
DB search
MPNNNEQQYEPLTFDAIKIGLASPEKILEWSRGEVTKPETINYRTLKPEKDGLFCERIFG
PSKDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIALAAPVSHIWYFKGIPSR
MGLILDISPRTLERVLYFASYIVLDKGETDLSYKQILSEAEYQEAKEKWGRHAFRVGMGA
ESIKELLESIDLEKEYAELQAGLENATGQKRARIVKRLEVVEAFRESGNRPEWMILTAIP
VIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPKEMAIELFKPFVMKELVANGTAHNIKNAKKMVERLQPEVWDVLEEVIKEHPVML
NRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSQEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQLRPGAKGEGMFFKSVNEAILAYENGYIT
LHSQIKVRVTKTLANGEEKTGTIDATLGRLLFNEIIPQDLGFVDREVEGNELKMEIDFHV
GKKQLKQILEKVINTHGATQTAEVLDDVKAIGYKFSTRAAMTVSISDMTVPPQKPQMMQE
AQDTVDKITKNYKRGLITEEERYKEVVETWKATDDKLTEALLTGLDKYNNIFMMADSGAR
GSDKQIKQLAGMRGLMADTTGRTIELPIKSNFREGLDVLEYFMSAHGARKGMADTALRTA
DSGYLTRRLVDVSQELIIHDTDCAKPGQPLPGMYVSAFMDGNEEIESLQDRITGRFAAED
LKDKDGNVLVKANHMITPRRAERVMKKGVDENGNPLEQVKIRTILTCKCKNGVCSKCYGA
NMATGEAVQVGEAVGIMAAQSIGEPGTQLTMRTFHNGGVAGDDITQGLPRVEELFEARRP
KGLAIITEIAGRATLSDTKKKREVIVTNEETGESKSYLIPYGSRIKVQDGVMLEAGDELT
EGSVNPHDILKIKGLRATQDYMLQEVQRVYRLQGVEINDKHIEVIVRQMLKKIRIEEKGD
TEFLPGTMVDVLEFEEVNEQLVAEGKEPATGEQIMLGITKASLATESFLSAASFQETTKV
LTEAAIKGKVDHLVGLKENVIIGKHIPAGTGMKKYRDVKLNTDIKMEDELDLEDDLNLDE
DFDMNENVDLTDEFVEENTEDAAETSVEEPATEE
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgccaaataacaatgaacaacaatatgaaccgttaacatttgatgcgattaagatcggc
ctggcttcacctgaaaaaatcctggagtggtccagaggtgaggtaacaaagccggagacc
atcaactacaggactttgaagccggagaaggacggacttttctgtgagagaatcttcgga
ccaagcaaagactgggagtgtcactgcggtaaatacaaaaagatccgttataagggtgtt
gtatgtgatcgctgtggtgttgaggttacaaaggccagtgttcgtcgtgagcgtatggga
cacatcgctctggcagcaccggtatcccatatctggtacttcaaaggaattccgagccgt
atgggtctgatccttgacatttctccaagaacactggagagagtactttactttgcttct
tacatcgtgcttgataagggagagacagatctctcttacaagcagattctttcagaggca
gagtatcaggaagcaaaggaaaaatggggaagacatgcattccgtgtaggtatgggtgct
gaatccatcaaagagcttcttgagtctattgaccttgagaaagaatatgcagaacttcag
gcaggcctggagaatgcaacaggacagaagcgtgcgagaattgtaaaacgtctggaagtt
gtagaagcattccgcgagtccggaaacagaccggagtggatgatccttacagctatcccg
gttatcccgccggatctgcgtcctatggtacagctggatggaggacgttttgcaacatct
gacctgaatgatctgtacagaagaatcattaacagaaataaccgtctgagaagactcctt
gaactgggagcaccagatattatcgtaagaaacgagaagcgtatgcttcaggaagctgtt
gatgcgctgatcgataacggacgtcgtggacgtccggtaacaggacctggaaacagagca
ctcaagtctctgtctgacatgctgaaaggtaagtccggacgtttccgtcagaacctgctt
ggaaaacgtgttgactattcaggacgttctgttatcgtcgttggaccagaactgaagatc
tatcagtgtggtctgccgaaagagatggcaatcgagctgttcaagccattcgttatgaaa
gagcttgtagcgaacggaacagcacacaatatcaaaaatgcaaagaaaatggtcgagaga
cttcagccagaggtatgggatgtgcttgaagaagtaatcaaagagcatccggttatgctg
aaccgtgcccctactctgcatagacttggtatccaggcatttgagccaatccttgtagaa
ggtaaggcaatcaagcttcatccactggtatgtacagcttacaatgccgatttcgatgga
gaccagatggctgtccatgtaccgctgtcacaggaagcacaggcagagtgccgtttcctt
cttctttcaccaaacaacttgctgaaaccatctgatggtggtccggtagccgttccttca
caggatatggtacttggtatttactatctgactcagcttcgtcctggtgcaaagggagag
ggcatgttctttaagagcgtgaacgaggctattcttgcatacgagaatggatatatcaca
cttcactcacagattaaagtacgtgtgacaaagactcttgcaaatggagaagagaagaca
ggaactatcgacgcaacacttggtcgtcttctgtttaacgagatcattccacaggatctt
ggttttgtagaccgtgaggttgagggaaatgaacttaagatggagattgacttccatgtt
ggtaagaaacagctgaagcagatccttgagaaagttatcaatactcatggagctacacag
acagcagaagttcttgatgatgttaaggcaatcggatacaagttctctacaagagcagct
atgacagtatccatttccgatatgactgtaccaccgcagaaaccgcagatgatgcaggaa
gcacaggatacagtagacaagatcacaaagaactacaaacgtggtcttatcacagaggaa
gagcgttacaaagaagttgttgagacatggaaagcaactgatgataaactgacagaggca
ctgctgacaggtcttgataaatacaataacatcttcatgatggcagattccggagcccgt
ggatctgacaagcagatcaaacagcttgcaggtatgcgtggacttatggctgatacaaca
ggtcgtacgatcgagttgcctatcaagtcaaacttccgtgaaggtcttgacgtactggaa
tacttcatgtctgcccatggagctcgaaaaggaatggccgatacagctcttcgtacagcc
gattccggttacctgacaagacgtcttgtagacgtatctcaggagcttatcattcacgat
acagattgtgcaaaaccgggtcagccgcttccgggaatgtatgtatctgcattcatggat
ggaaatgaagagattgagagccttcaggatcgtatcacaggaagatttgctgctgaggat
cttaaagataaagacggaaacgtccttgtaaaagcaaaccatatgattacacctcgtcgt
gcagagcgcgtgatgaagaaaggtgttgacgagaacggaaatcctcttgagcaggttaag
atccgtacaattcttacatgtaaatgtaagaatggtgtatgctccaaatgttatggtgcg
aacatggcaacaggtgaggcagttcaggttggtgaggcagtcggaatcatggccgctcag
tcaatcggagaaccaggtacacagcttactatgcgtacattccataatggtggagttgcc
ggtgacgatatcacacagggtcttcctcgtgtcgaggagcttttcgaggcaagaagacct
aagggacttgccatcatcacagagatcgcaggacgtgcaacactcagtgatacaaagaag
aaacgtgaggttatcgttacaaacgaagagacaggagaatccaaatcctatcttattcct
tacggatcacgtatcaaagtacaggacggcgttatgcttgaagccggagatgagcttaca
gaaggtagcgtaaatccacatgatatcctgaaaatcaaaggacttcgtgcaacacaggat
tatatgctccaggaagtacagcgtgtataccgtctccagggtgttgagatcaacgataag
catatcgaggttatcgttcgtcagatgctgaagaagatcagaatcgaagagaagggtgat
acagagttcctgcctggaacaatggtagacgttcttgagttcgaagaagtaaacgagcag
cttgttgcagaaggaaaagagccggctaccggagagcagatcatgcttggtatcacaaag
gcctctctggcaacagaatccttcctgtcagccgcttccttccaggagacaacaaaggtt
ctgacagaagcagctatcaagggtaaagttgaccatctggttggtctgaaagagaacgtt
atcatcggtaaacatattcctgccggaacaggtatgaagaagtaccgtgatgtaaaactc
aacacagatattaagatggaagatgaactggatcttgaagatgatctgaatctggatgaa
gattttgacatgaacgaaaatgttgatctgacagatgagttcgtagaagagaacacagaa
gatgctgcagaaacatccgtagaagaaccagcaacagaagaataa
DBGET
integrated database retrieval system