Ruminococcus torques: RTO_31420
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Entry
RTO_31420 CDS
T02606
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rto
Ruminococcus torques
Pathway
rto03420
Nucleotide excision repair
rto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RTO_31420
03430 Mismatch repair
RTO_31420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rto03400
]
RTO_31420
Enzymes [BR:
rto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RTO_31420
DNA repair and recombination proteins [BR:
rto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RTO_31420
MMR (mismatch excision repair)
Other MMR factors
RTO_31420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
AAA_19
UvrD_C
UvrD_C_2
Cas_Cas4
AAA_30
AAA_11
DUF2340
AAA_22
PAP_fibrillin
Dmd
HTH_ABP1_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
CBL27530
UniProt:
D4M0H0
LinkDB
All DBs
Position
3229907..3232771
Genome browser
AA seq
954 aa
AA seq
DB search
MFNYGNANEAQKEAISATDGLVLITAGPGTGKTFTLVKRAVYLIQECGIKPEQIMMATFT
EKAAKELITRITNELAERNISVNVNEMYIGTFHSLCLRIIKENLEFTRLKRNYRLLDTFD
QKYLVFRNFHRFKNIEGIDELLSKGGSWKRSDEICTYINHLSEEMVDIEALQSDDNPEIR
TLGRVLSVYQEMLEEGNLIDFSTIQTECYKLLMQNKQILEELQDKLQYLMIDEYQDTNYI
QEQIVFLLGAKHHNICVVGDDDQGLYRFRGATIRNILEFPHKFENEECKIIPLVVNYRSN
SDIVDFYNEWMSMTSGHKFKFSWDRYRYQKKIEPHVKSDIQSPAVVKLFSKDDEDEWHEK
ILGFIKELKESGKLTDYNQLAFLFSSVKHQRVTALASFLERNGINVYSPRSDMFFKRDEI
KLALGCLMLMFPRYVMKLEKQEFDFLQVEHYRYYRECIVAANEYVTRADNKELLQFIRKH
GKAHAGLTGTTDYAYSGLLYKLFMFRPFSDILDTDMSVGVVDIRPTRNLALLTQIIGKFE
YLHRVDVFNGSYIDRNTELLFNLYLKLLYDGGISEYEDEAEYAPSGCVSFLTIHQSKGME
FPIVFVDSLSNVPRKTYKDLMTEVEEKYFHRPAFEPYDQTKYFDFWRLYYTAFSRAQNLL
VLTCDENKRTPSQYFRDIYDEVQSVDSDKFDISEFSFQSVKKVNLKNSFSFTSHITVYET
CALQYKFYKELEFMPVRQNAMMFGTLVHETIEDIHRAAIRGEVDKITNDNIATWFESNYN
SLVKSEHTYLAEPQRNTALSQVERYAERMDGKWASVQQAEVNVSLVKEDYIIDGKIDLVK
GVDGTVEIVDFKSERKPDMIKMRERLEHYRRQLQIYAYLIEQRTGQKVSKMHLYYTGEEN
GNPMITYPYTRTAIEGTVAAFDDTVHKILRKDFKHRCDDAKTCKNCDFRYYCNK
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtttaattatggaaatgcaaacgaagctcaaaaggaagcaataagtgccacagacggt
cttgtacttatcacagcaggacccggtacaggtaaaacgtttacacttgttaagagggcg
gtttatctcattcaagaatgtggcataaaacctgaacaaataatgatggctacttttacg
gaaaaggcagctaaagaacttataactcgtattacaaatgagttagcagaaaggaatatt
tctgtcaatgtaaatgaaatgtatattggtacatttcactctttatgtttgaggattata
aaagagaatttagagtttacaagacttaaacgaaattatcgtttacttgatactttcgac
caaaagtatcttgtgtttagaaattttcacagatttaagaatatagaaggaattgatgag
cttctttcaaagggaggttcttggaaacggtctgatgagatttgcacatatatcaaccac
ttgtctgaagaaatggttgatattgaagcattgcaatcagatgataatcctgagataaga
acacttggaagagtactgtctgtttatcaagaaatgcttgaggaaggaaatttgattgat
ttctcaacaattcagactgaatgttacaaattgcttatgcagaataaacagatattagaa
gaattacaagataaacttcaatatcttatgatagatgaatatcaggatacaaactatata
caggaacagatagtttttttgcttggagctaaacatcataatatatgcgttgtaggagat
gatgaccaaggtttatatcgttttagaggtgcaactatccgtaatatacttgaatttccg
cacaaatttgaaaatgaggaatgtaagattattccgttggtagtaaattatcgttctaat
agcgatattgtggatttctataatgaatggatgtcgatgacatcgggacacaaattcaaa
ttttcttgggatagatatcgctatcaaaagaaaattgagccacacgtaaagtccgatata
caaagtcctgcggtagtaaaattatttagcaaagatgatgaggatgagtggcacgagaaa
atacttggttttattaaggagttaaaagaatcaggaaagcttacggattacaaccaactg
gcttttttattcagctcggttaagcatcagcgagtaacagcacttgcaagttttttggag
agaaatggaataaatgtctattctcctcgttcagatatgtttttcaaacgtgatgagata
aaattggcattggggtgtttaatgctaatgtttcctagatatgtaatgaaacttgaaaaa
caagaatttgattttttgcaggtagaacattaccgatattatagggaatgcattgttgct
gcgaatgaatatgttactagggcggataataaagaactattgcagtttattagaaaacac
ggcaaagcacacgcagggttgactggaacaacggactatgcttattcaggattgctttat
aagttgtttatgtttagaccttttagcgatattcttgatacagatatgagtgtaggtgtt
gttgatattcgacctacaagaaatcttgcgttacttacacagataatcggtaagtttgag
tatctacatagagttgatgtatttaatggttcatatattgatagaaacacagaactgctt
ttcaatctttatttaaaactactttatgacggtggaatatccgagtatgaggacgaggcg
gagtatgcaccgagtggttgtgtgtcattccttacaatacatcaatctaaaggaatggag
ttcccgattgtatttgtggattctttaagtaatgtaccgagaaaaacatataaagacctt
atgacagaagtcgaggaaaaatatttccatagaccggcatttgaaccttatgaccaaaca
aagtattttgatttttggagattatactatacggctttttcaagggcgcagaatttgctc
gtacttacctgtgatgaaaacaaacgcactccaagccaatattttagagatatttatgat
gaagttcagagtgtggatagtgacaaatttgatataagcgaattttcttttcaatctgta
aagaaggtaaatttgaaaaattccttttcgtttacttctcacattacagtttatgaaact
tgtgctttacagtataagttctataaggaacttgaatttatgcctgttcgacagaacgct
atgatgttcggtactttggttcatgaaactattgaagatattcatagagctgctatcaga
ggagaagttgacaaaattactaacgataatattgctacttggtttgagtcaaattataac
tcgcttgttaagtcggagcatacttatttggctgaaccacagcgtaatacagcactcagt
caagtagaacgatatgcagagagaatggacggaaaatgggcatctgttcagcaggctgag
gtaaatgtcagtcttgttaaagaggactatatcatagatggtaagattgaccttgtcaaa
ggcgttgatggtacagttgaaatagttgatttcaaatctgagcgaaagccagatatgatt
aagatgcgagaaagattagaacattatcgtagacaattacaaatctatgcttatcttatt
gaacagagaaccggacagaaggtaagcaaaatgcatctctactatacgggagaagaaaat
ggtaatccgatgataacatatccttatacaaggactgctattgaaggaacagttgcagct
tttgatgatactgtacataaaattctgaggaaggattttaagcatcgttgcgatgatgcg
aaaacttgtaagaactgcgatttccgatactactgtaataagtaa
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