KEGG   Rhincodon typus (whale shark): 109910422
Entry
109910422         CDS       T06055                                 
Name
(RefSeq) bromodomain and WD repeat-containing protein 3-like isoform X1
  KO
K11798  bromodomain and WD repeat domain containing protein 1/3
Organism
rtp  Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rtp04121]
    109910422
Ubiquitin system [BR:rtp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     109910422
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Bromodomain WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_EML WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_WDR35_TULP_N NBCH_WD40 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 109910422
NCBI-ProteinID: XP_048458714
LinkDB
Position
11:complement(17349948..17529233)
AA seq 1824 aa
MAETTATSPKVSPLESELYFLIARFLSAGPCRKSAEILVEELEEKELLPKRLDWEGNEHH
RSYENFVLSNQHVPPDYLLRICQRIGTLLDKELPSSVSGVQSLLGAGRQSLLRTAKDCKQ
VVWRSSAFAALHRGRPPEMPVTYGSPPSVVEIVRGRQLTGSGHFGSIFPTCTYQHIKMHR
RILGHLSSVYCVAFDRTGHRIFTGSDDCLVKIWATHTGRLLSTLRGHSTEISDMAVNYEN
TMLAAGSCDKLIRVWCLRTCAPVAVLQGHTGSITSLQFSPMGKGSVRYMASTGSDGSVCF
WQWDPNTLKFKNQPLKFTERSRPCSPMICSSFSVGGMFLAAGSSDHMIRIYYIGSGTPEK
ISELESHLDKVDSIQFSNNGDRLVSGSRDGTARIWQYQYQEWKSILLDMGAQLPGITSCP
GDDKVTKLKVTMVAWDRHDDNVITAVNNHTLKVWNSYTGQLLHILMGHEDEVFVLEPHPF
DSRIILSAGHDGNIFIWDITKGMKSHHYFNMIEGQGHGAVFDCKFSPDGQHFACTDSHGH
LLIFGFGCSKLYEKIPEQMFFHTDYRPLIRDGNNFVLDEQTQQAPHLMPPPFLVDVDGNP
HRTEYQRLVPGREKCLDEQLIPQLGYVATSDGNVVEQVIGQQTNDQDEQNMDASVLDGII
RNLQQEQDQRLGAEQPGANNPPSRISTPSRVLRNPSSDILSPPNVGLRRSGQIEGVRQMH
HNAPRSQIATEGDIMAWKRRVVVPEIQPSVNRMQEDFRIAKSEEEIALYTREKKRRPVHT
TQRNDSLESWEHTKRKMRAQRREQHKYRTRAAVEELAQFFHDEAEEVSSEEESNSAEGTG
GSSEEWRSETNSSSDSSSEYSDWTANAGINLQPPKRPTRRRAPLIMSSSEDEQDDKAKPS
WNQKIKKPKGRPRKRPNPVPTGEGTISEEWHPPKWITDTVPRRSPYVPQMGDEVVYFRQG
HEAYVEAVKKAKIYTISLRKQPWHKLEIRDQEFLKIVGLKYEVGPPTLCCLKLAFIDQDT
GKIMDKSFSVKYHDMPDVIDFLVLRQFYDEARERNWKAGDKFRSIIDDVWWFGTALSQEP
FQPAYPDSHFQCYTVRWENNEIERLSPWDMEPIPENAEFPDDPSAGVPVTVEELEALLYR
PQEGEWGEESRDEECERIIRGIDDLVTLDIATPFNAPVDLRAYPVYCMVVSYLTDLSTIR
MRLVNRFYRRISALVWEVRYIEHNARTFNEPDSPIVSSARRIADLLLKFIENKDCIDIFE
IWSTMENCSLDSEGEDEENDETVNAAVAGTSTTRRSRVGHAFGRNLSYDVSTWKTQCREL
LEILFQCEDSEPFRNPVDLTEYPDYRDIIHTPMDLATIKNALEMENYESPIELCKDVRLI
FSNAKAYSPNKKSKIYSMTLRLSAFFEDQIRTIVSDYKTALKYKKRSQHKQRYKKRLHSS
DASRSSSRASSPDRKRKPVKSQAKVEHISKISTSLHSSQNSASSTGDSACSDASEHSSTS
AKIRDMKAKTTVLTIKKDRKEDLPNGSVESTTASDGGDCSESSAEENESTIKSWAEPVAG
SSRTARKHVSPNKKTETSGTQVNGDNRKLVRQNMAAKKRKILSDSEEEDSVSEREQEILS
AVKRRKYACVLEDDDSLSENQQQHEDGEARKHSSGGNTSSGTENRSRSSSQSKSQSKSQS
DSESQSVSDLDSDYNVNARAKVKSKIKVKAKTQVKRGRPRKIKGRGKNKVVTSKKVTSRL
EYKKQQKILDSDDEDGDDDDDDSDYVKRDCVCRPSAIRTRNQGRRTVRYDDYDSDTDSLL
HSEIASRGVSRSGRVRRIPMRVRD
NT seq 5475 nt   +upstreamnt  +downstreamnt
atggccgagacaaccgctacctctcctaaagtctctccattagaatcagagctctacttc
ctaatcgctcgctttctctcggcgggtccttgccgaaagtccgcggagatactagtggag
gagctggaagagaaagagctgctcccgaagcgcctggactgggaaggcaatgaacaccac
agaagctatgaaaactttgttttgtcaaatcaacatgtgccccctgattatctcttgcgg
atatgccagcgaattggcacactgctggataaagagcttccttcaagtgtgtctggtgta
cagtccctacttggtgcaggcagacagtccctacttcgaactgcaaaagattgtaaacaa
gtggtatggagaagttctgcttttgcagcccttcatagaggaaggccaccagaaatgcct
gtaacctatgggagtccacctagtgttgtcgagattgtccgtggcagacaattgacggga
agtggacattttggctcaatttttccaacctgtacctatcagcacataaagatgcatcgc
agaattcttggacatctgtcgtcagtttattgtgttgcctttgatcgcacagggcacagg
atttttactggttctgatgactgtctggtgaaaatttgggccacacacactgggcgatta
ctctccaccctacgtggtcactccactgagatttctgatatggctgtaaattatgagaac
actatgctagcagctggcagctgtgataaactaattcgagtttggtgcttgagaacgtgt
gctccggtagctgtgttgcaggggcacacgggatccattacttctctacagtttagtccg
atgggtaaaggttcagtccggtacatggcttccacaggatctgatgggagtgtttgcttt
tggcagtgggatccaaataccctgaagttcaagaatcagccattgaagtttacggaacgc
tcaagaccatgttctccaatgatttgctcctcgttcagtgttggtggcatgtttctagca
gctggcagcagtgatcatatgatcagaatatattacattggatctggaacccctgagaag
atttctgaattagaatcgcatctggacaaagtagacagtattcagttctccaacaatggt
gatagattggtcagtggtagcagagatggaacagcacggatctggcaatatcagtatcaa
gagtggaaaagtatcttgttagacatgggtgctcaattgccaggaatcacctcctgtcca
ggggatgataaggtcacaaaacttaaagtgacaatggttgcttgggatcgtcatgatgac
aatgttatcaccgcagtgaataaccatacactaaaggtgtggaattcatatactggacag
ttgctgcacatcttaatgggtcacgaagatgaagtgtttgttttggagccacatccattt
gactccagaattattttgtctgctggccatgatggcaatatcttcatttgggacattact
aaaggcatgaaatctcaccattactttaacatgattgaaggccaaggtcatggtgctgta
tttgattgcaaattttcaccagatggccaacactttgcttgcacagattcacatgggcat
ctgcttatatttgggtttggatgcagtaaactgtatgaaaagattccagaacaaatgttt
ttccatactgactatcgtcccctaattcgtgatgggaacaattttgtcttggatgagcaa
actcaacaggctccccatctcatgccaccacccttcttggtggatgtggacggaaatcct
catcgaacagaataccagcgattggtgccaggtcgtgagaaatgtctagatgagcagctg
ataccacaacttggatatgtggcaacaagtgatggtaatgttgtggaacaagtaattggg
cagcaaacaaatgatcaagatgagcaaaacatggatgcgagtgtgctggatggcataatc
cgaaatttacaacaggagcaagaccaacggttgggagctgaacaacctggggcaaataat
ccccccagtaggatcagcacaccttcaagagttttaaggaaccccagctctgacattttg
tcaccaccaaatgtgggactgcgccgtagtggacagattgaaggtgttcgtcagatgcat
cacaatgctccccgtagccaaatagccacagaaggtgacatcatggcctggaagcgaaga
gttgtagtaccagaaatacaaccaagtgtgaacaggatgcaggaagattttaggattgct
aaaagcgaagaggaaattgccttgtatacaagagagaagaaaagacgaccagtacacact
acgcaaaggaatgactccttggagtcgtgggaacacaccaaaagaaaaatgagggcacag
cgtcgtgagcaacacaaatatagaacgcgtgctgctgtggaggaactagctcaatttttc
catgacgaagcagaggaagttagttctgaagaggaaagtaattcagcagaggggactgga
ggctcttcagaggaatggcggagtgaaactaacagctcaagtgattcttcaagtgagtat
tcagattggacagcaaatgcaggaattaatcttcagccaccgaaaagaccaaccagacgg
cgagctccactcattatgagcagctcagaagatgaacaagatgataaagctaaaccatca
tggaatcaaaagataaagaaacctaaaggaagaccacggaagagacccaatccagtgcca
actggagaaggtacaatttcagaggaatggcatcccccaaagtggatcacagatactgta
ccacgcaggtcaccatatgttccacaaatgggtgatgaggttgtctactttaggcaaggc
catgaagcctatgtagaagctgtcaaaaaggcaaaaatatacaccattagcttacgcaag
cagccatggcataaactggaaattagggatcaagaatttttaaaaattgttggactaaaa
tatgaagttggccctcctacattgtgctgtctcaaacttgccttcatcgatcaggacaca
ggcaaaattatggataagtcattttcagtgaaataccatgacatgcctgatgtaattgat
tttcttgtattacgtcagttttatgatgaagcaagggagaggaattggaaagctggtgat
aaatttcggtctataatagatgatgtttggtggtttgggacagccttaagtcaagaacca
ttccagccagcatatccagatagccatttccagtgttacactgttcgctgggagaacaat
gaaattgaaaggctcagtccttgggacatggaacctattcctgaaaatgctgaatttcct
gatgatcctagtgctggtgttcctgtgaccgtggaagagctcgaagctctgctgtacaga
cctcaagaaggagagtggggagaagaatcaagagatgaagaatgtgagcgtattataagg
ggcattgatgaccttgtgacactagatatagcaactccatttaacgctcctgtggatctt
cgtgcatatcctgtatattgtatggtggtttcctaccttacagacctgagcaccattaga
atgagactggttaatagattttacaggaggatcagtgcacttgtatgggaggtgaggtat
atagaacacaatgcaagaactttcaatgaaccagatagtcctattgtttcatcagccagg
cgaatcgctgatctgcttctcaagttcattgagaataaagactgcattgatatttttgaa
atttggagcacaatggagaactgttcactggattctgaaggagaggatgaggaaaatgac
gagacagtgaatgctgctgttgcaggaacatctaccactagaagaagccgtgttgggcat
gcatttggccggaatctgagctatgatgtcagcacttggaaaactcagtgcagggaactg
ctggagatcctgtttcaatgtgaagactctgaacctttcaggaatcctgtggacctcact
gaatacccagattacagggatattatacacactccaatggacctggcaactataaaaaat
gcattagaaatggaaaattatgaaagtcccattgaactttgcaaagatgtgcgactaatc
ttcagcaacgctaaagcttattctccaaacaagaaatctaagatctacagcatgactctg
aggttgtcggcattttttgaggaccaaattcgaacaattgtctctgattataaaactgcg
ctaaaatacaagaaaaggagtcagcacaaacagagatataagaaacgtctacatagttct
gatgcttccagatcaagtagcagagcctccagtccagaccgaaaacggaagccagtgaag
tctcaggcaaaagtagaacatatttccaaaatatctacctcattacattcatctcagaac
agcgcaagtagtactggagatagtgcctgcagtgatgcttctgagcattcttctacatca
gccaaaataagggacatgaaggctaaaacaactgtcctaaccataaagaaggacagaaaa
gaagatttgcccaatgggtcagttgaatcaacaacagcatcagacggtggagactgcagt
gaaagttctgccgaagagaatgaaagtaccattaagtcttgggctgagcctgtggcaggc
agcagtagaacagcaagaaagcatgtatcaccaaataaaaaaacagaaacaagtggtact
caggtaaatggagacaacaggaaattggtccgtcagaatatggcagccaagaaacgcaag
atcttgagtgattctgaggaagaagactctgtttctgagagggagcaggagatattaagc
gctgttaagcgaagaaaatatgcctgtgttttggaagatgatgactcactgtctgagaac
caacagcaacatgaggacggggaagcccgaaaacacagctctggtggcaataccagttct
gggactgaaaaccgctcccgctccagttctcaatcaaaatctcaatcaaaatctcaatca
gactctgaatcccaatccgtttctgatttggatagcgattacaatgtgaacgctagggca
aaagtgaaatcaaagataaaagtgaaagcaaagacacaggtgaagagagggagaccaaga
aaaattaaagggagaggaaaaaataaagtagttacttctaaaaaagtcaccagtaggtta
gaatataagaagcagcaaaagatcttggacagcgatgatgaagatggggatgatgacgac
gatgactctgattatgtaaaacgagattgtgtttgtagaccatctgcaataaggaccaga
aatcaaggcagaaggactgtaagatatgatgattatgattccgatacagacagcctttta
catagtgaaatagctagccgtggagtgtcgaggtctggacgggtacgacgaatacccatg
agagttagagactga

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