Rhincodon typus (whale shark): 109910681
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Entry
109910681 CDS
T06055
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109910681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109910681
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109910681
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109910681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_5
zf-RING_2
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
109910681
NCBI-ProteinID:
XP_020365496
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All DBs
Position
2:complement(118873297..118875367)
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AA seq
381 aa
AA seq
DB search
MSDAGSERQPRGLVRDIELHVLECKVCFERFGSSPARRPCSLPCGHAVCRQCAWALCRPE
PRRQLECPFCRWSGPVSRAADCLPLLQLAELLSSAAAEPLSTGTWPAELSSVFGGWGELL
NPRGLAVCSHSGALAVVQDGEQWLRLLEWGGRPLPGLGPSADERPVYPLDVAVAGGGQLL
VVTDAGDRSVKVFARRPGGRLELVLTEGGFGLPWGLDCGSAERLALTDWAQGSLLLLDLQ
LPGGASLRRDSVCHGLCHPREVAVSRRDGCIHVVEHPGSRGGRRLKTFNSRGHLVRQLDG
LGRSPGAGLGISGIAVDGQGNVLLADGDSGTVVWVSGPDNRQCRTLIERGLVRPVALAWA
ADHTLMVLDAGDHTLKVYTVR
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgccgggtccgagcggcagccccgcggcctggtgcgggacatcgagctgcat
gtgctcgagtgcaaggtgtgtttcgagaggtttggcagcagcccggcccgccgaccgtgc
agcctgccgtgcggccacgccgtgtgcaggcagtgcgcctgggccctgtgccggcccgag
ccccggaggcagctcgaatgccctttctgccgctggagcgggcccgtgtcgcgggccgcc
gactgcctccccttgctgcagctggccgagctgctgtcttcagcggccgctgagcccctc
agtaccgggacctggccggcggagctcagctccgtgtttgggggttggggtgagctgctt
aacccccggggtctggcggtctgctctcactccggagccctggccgtggtccaggacggc
gagcagtggctccggctcttggagtggggcggccgcccgctgccgggcctgggccccagt
gcggacgagcggcccgtctacccgctggacgtggcggtggccggaggcgggcagctgctg
gtggtgacggacgccggggacaggtcggtcaaggtgttcgcccggaggccgggcggccgg
ctcgaactggtgttaacggaaggcggcttcggcctgccctgggggctggactgcggctcg
gccgagcgcttagcgctgaccgactgggcccagggctcgctgctgctgctcgacctgcag
ctgcccggcggggcttcactccggcgggacagcgtctgtcacgggctctgccacccccgg
gaagtggccgtcagccggcgggacggctgtatccacgtcgtggagcatcccggatccaga
gggggccggcggctgaagaccttcaacagtcgggggcacctggtccgtcagttggacggc
ctgggccggagccccggagccggcctcggcatttctggtatcgccgtcgacggtcaaggc
aacgtcctgctcgcggacggggacagtggcaccgtggtgtgggtaagcggcccggacaac
cggcaatgcaggaccctgatcgagcggggcctggtccggcctgtggccttggcctgggcc
gctgaccacaccctgatggtgctggacgctggagatcacaccctcaaagtgtacacggtc
cgctga
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