Rhincodon typus (whale shark): 109913347
Help
Entry
109913347 CDS
T06055
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109913347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtp03019
]
109913347
Messenger RNA biogenesis [BR:
rtp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109913347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_CcmH_CycH
TPR_2
TPR_8
TPR_14
TPR_19
TPR_11
TPR_16
TPR_17
TPR_12
TPR_7
ARM_TT21
TPR_15
Motif
Other DBs
NCBI-GeneID:
109913347
NCBI-ProteinID:
XP_020368435
LinkDB
All DBs
Position
3:complement(82259258..82333877)
Genome browser
AA seq
1153 aa
AA seq
DB search
MASYPEVAETWELQGLISYTQKDYMQAEQSFQKALKMKADCGIYYYYLGLTYWFMGEAMR
KDKSKTATHLLKAAKLDTYNGRTFCYLGHYYHDIVQDKNRARGCYKKAFELNNADEEAGA
AAVDLSVELGDMETALAILRTVTDQSSAGTAKWAWLRRGLYYMRTNQNSQAVADLQAALR
ADLKDSNCWECLGEAYLSRGGYTAALKAFTKASELNPNSVYNIYKIAAIKQIIGKYAEAV
TEYKQIIQKSKKYVPALKGLGECYLMMTRNALDDCLDGRALDSAEEALQYLARAVQCRPD
VSCLWKLIGDTCTTLHVLSPAKVNIRVSAILIGQDEKRNVHYLDKNELLRLGGRCYGRAL
TLMSPSANLWCDLGVNYYRQAQATAEGNIMSELLEKALLCLKKSVMLDSKNHQHWNALGV
VASYKGIENYALAQHAFIKSVQVEQNNVVAWTNLGATYLKNENIELAHEAFKVAQSLEPS
YVVCWIGQALIAEAVGSYETMDLFRHTTELGVNIEGAKGYAHWVCTTLQDKSNRNSELYK
YNIVQMNAISAAQVVMSKYTERIQTDATAFTMLGYLNEYLSLKKQAEEAYHRAFVLLQNT
EDEEKLKCAQRNWMRALCAAGQYEKAIRTYMLNPLVEFDDIICLALAYLKKGLLQESAKA
YEKALTIARTEKEKAHIMIALAMIAFKEGRMNNAKTLLFKCSMLKEPNIESLQALCALGL
SKKDTTLATAALNELFKYSDKINSTYESCLLSSGMFSLQANSLAMQRQAAKAVHSNPADP
ALWTLLSRLVPQHTPQMAEGGVVAGNIAEILSSHQIKHALLFSAANQLAAGKHAVANEQK
NALKTIQKAVHLYPDDPAVWASLMAACHMENTLSHLENTKPKHTALEEMFVTTITSKVET
VKTMPTPYLQSLENWSLQQAVTGLKEVGRHSEAEAFCTKILKRHPDHPMVFLLLRQVQCE
QLLLSQQRLPDTVLGELKKAVMSNFTSVTAWHWLAEVYKSQGLMIAAEMCYRQGLQLSSQ
QGDMNGKLSSLLRLALLALSLSTIKLQSNRWASLVKEATGEAQKISFCPLAGLFQALLQF
VVKMGARETRRLLERVVYQPGYTESIASVGRWYLLRHLWAKNDDELITVLLQNAKMKGDS
RVEELHKKLIESS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtatcctgaagtggctgaaacatgggaactccagggccttattagttatacc
caaaaggattatatgcaagcagaacaaagtttccagaaagccctgaaaatgaaagcagac
tgtggaatatattactactaccttggactaacttattggttcatgggggaggcgatgaga
aaagacaaatctaaaactgctacacatttgttaaaggctgccaagttggatacgtacaat
ggaagaacattctgctacttaggccactactatcatgacatagtacaagataaaaacaga
gctcgtggttgctacaaaaaagcctttgagctaaataatgctgatgaagaagcaggagca
gctgctgttgatctcagtgttgaacttggagatatggagactgctcttgcaattctgagg
acagtaactgatcagtcaagtgctggaacagccaaatgggcttggcttagacgaggactt
tattacatgagaaccaaccagaattcacaggctgtggcagatttacaagcagccttgaga
gcagacctgaaagattcaaattgctgggaatgtttaggagaggcttatctcagtagagga
ggttacactgctgctttaaaggctttcactaaagccagtgaactgaatccaaactccgta
tacaacatttacaagattgcagccattaaacagattattggcaagtatgcagaagcagtt
acagagtataaacagataattcagaagtcaaagaaatatgttcctgccctcaaaggccta
ggtgaatgttatttaatgatgacccgaaatgcccttgatgattgtttagatggaagggct
ttggattcagcagaagaggcacttcagtacttagctagagctgtacagtgtcggcctgat
gtatcctgtctgtggaagctgattggagatacatgcaccacactccacgttttgtcacca
gcaaaagttaacattagagtctctgccattctcattggacaggatgaaaagagaaatgtg
cactacttggataaaaatgaactgcttcgactcggaggaagatgctatggacgggccctt
acattgatgtcgccatctgccaatctgtggtgcgatcttggtgtgaactactatcgacag
gctcaggctactgcagaagggaatataatgtctgagttattggaaaaagcactactgtgc
ctcaaaaaatctgtgatgttggacagcaaaaatcatcaacactggaatgcacttggagtt
gttgcaagttataaaggtattgaaaattatgctcttgcacaacatgcctttatcaagtct
gtccaggttgaacaaaataatgtagtggcctggaccaacctgggagcaacttatttaaag
aacgaaaatattgagcttgcccatgaagcctttaaggtagcccagtctttggaaccctcg
tatgttgtgtgctggattggacaggcactaattgctgaagctgttggcagctatgagaca
atggacttgtttagacataccacagagcttggtgttaatattgaaggagctaaaggttat
gcacactgggtgtgtacaacactgcaggataaatcaaacagaaattctgaattgtacaag
tacaacattgtacaaatgaatgcaatatctgctgcacaagttgtcatgagcaaatataca
gagagaattcagactgatgcaacagctttcacaatgctgggttatctaaatgagtatcta
agcctgaaaaaacaagcagaagaggcatatcacagagcatttgtgctactccagaatact
gaagatgaagaaaaacttaagtgtgctcagagaaattggatgcgagctttatgtgctgcg
ggtcagtatgagaaggccatccggacttacatgttgaacccacttgtggagtttgatgac
ataatttgtcttgctctggcttacttgaagaaaggccttcttcaggagagtgccaaagct
tatgaaaaggctttaactattgcccgtacagagaaagagaaagcacacataatgattgct
cttgcaatgattgccttcaaagagggtagaatgaacaatgccaagactttactcttcaaa
tgttccatgctgaaggagcccaatatagaaagtctgcaggctttatgtgctctgggtctg
tcgaagaaggataccaccctcgctacagcagcacttaatgaactgttcaaatattcagat
aaaatcaactcaacctatgaatcctgccttctttcttcagggatgttttctttgcaagct
aacagtttagctatgcagagacaggcagctaaagctgtccatagcaatccagcggatcct
gccctttggacattattatccagacttgttccacaacatactccccagatggcagaaggt
ggagtagtggctggcaatattgcagagattttaagttcccatcagataaagcatgcactt
ttgttcagtgctgcgaatcagttggcagcaggtaaacatgcagtagccaatgaacaaaag
aatgctttaaaaactattcaaaaggcagtccatctctatccagatgatcctgctgtttgg
gccagtttaatggcagcctgtcacatggaaaatacattatcccatttagaaaacacgaaa
ccaaagcatactgcattagaggagatgtttgtcacaacaatcaccagcaaggttgaaaca
gtgaagaccatgccaactccttatcttcaatccctggagaactggtctctgcaacaagct
gtaactgggttaaaagaagtgggcaggcattctgaagctgaagccttctgcactaaaatt
ctaaagaggcacccagaccatcccatggtgttcctattgctgagacaggttcaatgtgaa
cagctgttgctttcacagcagcggcttccagatacagttttaggagaactgaaaaaggca
gtgatgtcgaacttcacatcagtgaccgcttggcattggctggcagaagtatataaatct
cagggtttaatgatagcagcagaaatgtgttacaggcaaggattgcaactatcttcacaa
caaggcgatatgaatggcaaactgtcaagtctgctcagattagcattgctcgccctctca
ctcagtacgattaaacttcaaagcaatcgatgggcatcactagtcaaagaagcaaccggt
gaagctcaaaagatctctttttgtcctcttgctggtctattccaagcactgctgcaattt
gtagttaaaatgggagcaagggaaacacgacggctgctcgagagagtggtatatcagcca
ggttacacggaaagcattgcatcagttggccgttggtacctcctccgacatttgtgggcc
aaaaatgatgatgaacttatcacagtattacttcaaaatgccaaaatgaaaggagattct
agagttgaagagctgcacaagaagcttattgaatcatcctaa
DBGET
integrated database retrieval system
