Rhincodon typus (whale shark): 109923518
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Entry
109923518 CDS
T06055
Name
(RefSeq) PHD finger protein 1-like
KO
K11467
PHD finger protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
109923518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtp03000
]
109923518
03036 Chromosome and associated proteins [BR:
rtp03036
]
109923518
Transcription factors [BR:
rtp03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
109923518
Chromosome and associated proteins [BR:
rtp03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
109923518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mtf2_C
Tudor_2
PHD
Prok-RING_1
Spore_coat_CotO
PHD_ash2p_like
RNA_pol_3_Rpc31
ASH2L-like_WH
SH3_TNRC18
PHDvar_NSD
TFIIF_alpha
ZrgA
Prothymosin
PPP4R2
Motif
Other DBs
NCBI-GeneID:
109923518
NCBI-ProteinID:
XP_048472658
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All DBs
Position
35:16122103..16166539
Genome browser
AA seq
602 aa
AA seq
DB search
MEGGPVGKSSKVKRNSPLATASKLRARASRATAKTQLWEGQDVLARWTDGLLYLGNIRKV
DRWKHICLVRFEDNSEFWVMWKDIYPPAIPGTEHICCLCKDDTTSQGNQVVNCAKCKQGY
HQECHAPKIEADGKILPAWICRSCIFAVATKKGGALKKGPYAKAMQAMKRVLPYQLRTLE
WDSQHLANQQQCYCYCGGPGEWNLKMLQCCRCLHWFHEACTQCLTKPLLYGDRFYLFVCC
VCTGGAEFVKRLPLEWVDIAHLILYHLSTCCRKKYFDFEREILAFANENWDNLLVGELSG
ASQSERYKQILNALNSHRSRFVSGKEIKKKKCIFGLQERTPPQPPPADTLCEIANQLMET
SANLSPKRSELEGVKKVKAKRRPPHRESQDLYELKTRQARRLLQKAISQNVVTNPYSPNQ
SYQGCRGSANMCPIRESTERTPPKMMYASIQPSSNAVRSLESSSSSSSFEYGENSGTQAK
AAGIGNRLLDCDDGADERPGDPAETEQEDEGEEEEEEDDEEEEEEEEEEEEEDGSDIPME
ARSQCDSSDDDLPLSYLRSSVNSYFGAMGRLARGETVRILARRLTLDNKVQYLVEWGGPS
IF
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgggcctgtggggaaaagttcaaaggtcaaaagaaacagccccttggcaaca
gcgagcaaactgagagcgcgagcgagccgtgccactgccaagacacaactgtgggaaggt
caggatgtgttggcccggtggactgatggcttactctacctgggaaacattcggaaggtg
gaccggtggaagcatatctgccttgttcggtttgaggacaactctgagttctgggtcatg
tggaaagacatctatccccctgcaatccctgggactgagcacatctgctgcctctgcaag
gatgacacgaccagtcagggcaaccaagttgtgaactgtgcaaaatgcaagcaagggtac
catcaggagtgccacgcccccaagatcgaggctgatggcaaaatcctgcccgcttggatc
tgccgctcctgtatctttgccgtagccaccaagaaaggaggtgccttaaagaaggggcct
tatgccaaagcgatgcaggccatgaagcgagtccttccctaccagctccggacccttgag
tgggactcccagcatctcgccaatcagcagcagtgttactgttactgcggaggccccgga
gagtggaatctgaagatgctgcagtgttgccggtgcctgcactggttccacgaggcctgt
acccagtgcctgaccaagccgctactctacggagacaggttctacctgttcgtatgctgt
gtctgtacaggtggagcagagtttgtgaaacggctgcctctggaatgggtcgacattgca
catctgatcctgtaccacctgagcacctgctgccggaagaagtactttgactttgagcga
gagatcctggcgtttgccaatgaaaactgggacaacctgctggttggtgagctctccggt
gcctcccagtctgaacgctacaagcagatcctcaacgccctgaacagccacaggagcaga
tttgtgtccgggaaggagatcaagaagaagaagtgtatctttggtctacaggagcggacg
ccacctcagcccccgcccgctgataccctgtgtgagattgcaaaccagctgatggagacc
tctgccaacctctctcccaaaaggtccgagctcgagggagtgaagaaggtgaaggccaag
aggcgtcctccccacagggagtcccaggacctgtacgaactaaagaccaggcaggcacgg
cgcctactgcagaaagccatcagccagaacgtcgtcacgaacccctacagccccaaccag
tcttaccaaggctgccgaggcagtgccaacatgtgtcccatcagggagagtaccgagagg
acacctccaaagatgatgtacgcatcgattcagccatcttcgaacgcagtccgcagtctg
gagtcctcgtcctcatcctcgtccttcgagtatggcgagaactcgggcactcaggccaag
gctgcgggcatcggcaaccggctgttggactgcgacgacggggccgatgagaggccgggc
gaccctgcagagacggagcaggaggacgagggggaagaggaggaggaggaggatgatgag
gaggaggaggaggaggaagaagaagaggaagaggaagatggctcggacatcccgatggag
gcccggtcgcagtgcgactccagcgacgacgacctgccgctctcctacctgcgctcatcc
gtcaacagctacttcggggcgatgggcagactggcgcggggggagacggtccgtatcctg
gcccgcagactcaccctggacaacaaagtgcagtacctggtggagtggggtggcccctcc
atattttag
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