Rhincodon typus (whale shark): 109933123
Help
Entry
109933123 CDS
T06055
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rtp04040
]
109933123 (scn1laa)
Ion channels [BR:
rtp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
109933123 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
ATP-synt_B
Exportin-T
PFF1_TM
Neur_chan_memb
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
109933123
NCBI-ProteinID:
XP_048454987
LinkDB
All DBs
Position
7:58449551..58570701
Genome browser
AA seq
1330 aa
AA seq
DB search
MAQPLLAPPGPDSLRLFTRESLATIERCIAEEKAKKPKDHHVDDDENGPKPNRDLEAGKS
LPYIYGDIPPGMVSEPLEDLDPFYSTQKTFIVLNKGKAIFRFSATPALYILSPFNPLRKL
AIKILVHSLFSMLIMCTIMTNCVFMTLYNPPDWTKNVEYTFTGIYTFESLIKILARGFCI
DNFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCVRWPPPASYYIPTNRSLSQNGMM
TNETEFIFNFDEYIEDERNHYFLEEAKDALLCGNGSDAGQCPAGYVCLKAGRNPNYGYTS
FDTFSWAFLSLFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAM
AYDEQNQATLEEAEQKEAEFQQMLEQLKRHQEEAQAAAAAAAEAGDENGRIGLCEMSHSS
SDASKLSSKSAKERRNRRKKRRQTELDAEEKDKGERIHKSESEDNGRKGNGFRFSLDRNC
LSYEKKNSSPHQSLLSIRGSIFSPRRNSRSSIFSFKGRTKDVGSENDFADDEHSTFEDNE
SRRGSLFIPRRQGERRSSNISQTSRSSRMLPVLPVNGKMHSTVDCNGVVSLAGGPSTPTS
PIGRLLPEVIIDKPATDDNGTNIETDLKKRRSGSHQFSMDFLEDPMQRQRALSVASILTN
TMEELEESRQKCPPCWYKFANTFLIWDCHPHWLKIKEIVHLIVMDPFVDLAITICIVLNT
AFMAMEHYPMTKSFEGVLTYGNLVFTGIFTGEMIFKIIALDPYYYFQEGWNIFDGIIVSL
SLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVF
IFAVVGMQLFGKSYKECVCKIEKTCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEV
AGQSMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAMGRIQRG
IDYVKRNVRELIHRAFIRRKVTEDIKPLDDLHSKKDIYISDHATVEITKDADYHKDGNCT
TSGIGSSMGKYNADESDYMSFIHNPSLTVTVPIALGESDFENLNTEDFTSESDLEGSKEK
LAESSSSEGSTVDRDPPGEGEQPEEVPEESMEPEACFTEGCIQKFPYCYVNIEEGRGKLW
WNLRKTCYRIVEHNWFETFIIFMILLSSGALAFEDIYIEQKHNIKSMLEYADKIFTYIFI
LEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELGAIKSLRTLRALRPL
RALSRFEGMR
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagccactgcttgcaccaccaggaccagacagcctccgcctttttacccgagaa
tctcttgcaactattgagagatgcattgcagaggaaaaagccaagaaacccaaggaccat
catgtggatgacgacgaaaatggcccaaaaccaaatcgtgatttggaagccggtaaatca
ctaccatatatttatggtgatatacctccagggatggtttctgagccattggaagacctg
gacccattttacagcacacaaaaaacctttatagtattgaacaaagggaaggcaatcttc
cgatttagtgccacacctgccttgtacattttaagtcctttcaatccattaaggaaatta
gctattaagattttggtacattcattgttcagcatgcttatcatgtgcactattatgacg
aattgtgtgtttatgaccctgtataatcctccagactggacgaagaatgtagagtacacc
ttcactggtatttacacatttgaatcgcttataaaaattcttgcaaggggcttctgtata
gataatttcacttttctccgagatccgtggaactggttggatttcagtgtcatccttatg
gcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
ctccgagcattgaaaacaatttcagtcattccaggtctcaaaaccatcgtgggtgccctg
atccagtcagtgaagaagctgtccgatgtaatgattctgactgttttttgtttgagcgtg
tttgcactaatagggctgcaactgttcatgggaaacctaaaacataaatgcgtgcgatgg
ccaccacctgccagctattatatcccaactaacagatctttaagccagaatggtatgatg
acaaatgaaacggaattcatattcaacttcgatgaatacatcgaagatgaacgaaatcac
tattttttggaagaagccaaagatgcacttttatgtggtaatggctcagatgctggtcaa
tgccctgcaggttacgtatgtctgaaagctggaagaaaccctaattatggttatactagc
tttgacacatttagttgggcattcctgtcattgtttcggcttatgacccaggactactgg
gaaaatctctaccagttgaccctgcgagctgctggcaaaacatacatgatattttttgtg
ttggttatattcctgggatctttttacttggtcaacttgatactggctgttgttgccatg
gcctatgatgagcaaaaccaggctactttagaggaagctgaacagaaagaggcagaattt
cagcagatgcttgaacaacttaaaagacatcaagaagaagcacaggctgcagctgctgct
gcagctgaggcaggagatgaaaatggaagaattggactatgtgaaatgtcccacagttcc
tcagatgcgtcaaagcttagttcaaagagtgccaaggagagacgaaacagaaggaagaaa
cgaagacaaactgagctagatgccgaggaaaaggataaaggtgaaaggattcacaagtca
gaatcagaggacaacggaagaaagggaaatggtttccggttttctcttgatcgcaactgt
ctttcttacgaaaagaaaaattcttccccacatcagtcactgctaagtattcgtggctcc
atcttttctccaagacgcaacagcagaagcagcatcttcagttttaaaggacggactaaa
gatgtcgggtcagaaaatgattttgctgatgatgagcacagcacttttgaagacaatgaa
agcagaaggggctcactctttattccacggaggcagggtgagagacgcagcagtaacatt
agtcagaccagtaggtcatccaggatgctaccagtgcttccagtgaatgggaagatgcac
agcacagtggactgcaatggagtagtttcacttgccggtggaccttcaactccaacatca
cccattggacgacttctgccagaggtgataatagataagccagctactgatgacaatggc
acaaatatagaaacagatcttaagaagagacgatcaggatctcatcaattttctatggat
tttctagaagatcctatgcaaaggcagagagcattgagtgtggccagtattctcacaaat
actatggaagaacttgaagaatcacgacagaagtgtcctccatgctggtataaatttgca
aataccttcttgatctgggattgccatccacactggctaaaaataaaggaaattgttcat
ttaattgtgatggacccctttgtggatcttgctattactatctgcattgtgctgaacact
gcttttatggcaatggaacattacccaatgacaaagagctttgaaggtgtactcacatat
gggaatttggtatttactggtatctttaccggtgaaatgattttcaaaatcatagccctg
gatccttattattacttccaagaagggtggaatatttttgatggcatcattgtgagtctc
agtctaatggaacttggtctcgctaatgtggaaggactatctgtgctgcgatctttccga
ttgctcagagtttttaaattggcaaagtcatggccgaccttgaacatgctgattaaaatt
attggcaactcagtaggtgctttgggcaacttgactttggtgttggctatcattgtcttc
atctttgctgtggtgggcatgcaactcttcggtaaaagctacaaggagtgtgtttgtaaa
attgagaagacctgtaaactgcctcgctggcacatgaacgacttctttcattcctttcta
attgtgttccgtgtgttgtgtggagaatggattgagacaatgtgggactgcatggaagta
gctggacaatcaatgtgcctcatcgtcttcatgatggtcatggtaattggtaatcttgtg
gtgttgaatttatttttggctttgctgctgagctcattcagtgctgacaaccttgctgct
acagatgatgacagtgaaatgaataacctgcagattgctatggggaggatacagagaggc
attgattatgttaaaaggaatgtgcgagaattaattcacagagcctttatcaggaggaaa
gtcacagaagacatcaaacctcttgatgatttgcatagcaagaaagacatatatatctct
gatcatgcaactgttgaaatcactaaagatgctgactatcataaggatggaaattgcacc
accagtggaatcggcagcagtatgggcaaatacaatgctgatgaaagtgactatatgtcc
tttattcacaatccaagcctcactgttactgttccaatagctttgggagagtcagacttt
gaaaaccttaatacagaagacttcactagtgaatcagacctagaaggtagcaaagagaaa
ctggctgaaagcagttcatcagaagggagcactgttgacagggatccacctggagaggga
gagcagccagaagaagtaccagaagaatccatggaacctgaagcatgctttactgaagga
tgtatacaaaaattcccatactgctatgtcaacatagaagaaggcaggggcaaattgtgg
tggaatctccggaagacctgctacagaatagttgaacacaattggtttgagacattcatt
attttcatgattctgctcagcagcggtgccctggcatttgaagatatttacattgaacaa
aagcataacatcaagtcaatgctggaatatgctgataaaatcttcacctacatctttatt
ctggaaatgttgctgaagtgggtggcctatggttttgtgaagtatttcacgaatgcttgg
tgttggctggacttcctcattgttgacgtgtctttggtgagccttgtagctaatgccctg
ggctactcagaactaggtgctattaagtcccttcggacactaagagctttaagacctctt
agggccttgtcacgttttgaaggcatgaggtaa
DBGET
integrated database retrieval system
