Rhincodon typus (whale shark): 109939112
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Entry
109939112 CDS
T06055
Symbol
ufd1l
Name
(RefSeq) ubiquitin recognition factor in ER-associated degradation protein 1 isoform X3
KO
K14016
ubiquitin fusion degradation protein 1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109939112 (ufd1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtp03009
]
109939112 (ufd1l)
Ribosome biogenesis [BR:
rtp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
109939112 (ufd1l)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UFD1_N1
UFD1_N2
CDC48_2
Motif
Other DBs
NCBI-GeneID:
109939112
NCBI-ProteinID:
XP_020392994
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Position
24:complement(6988457..7011203)
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AA seq
307 aa
AA seq
DB search
MFAFNMFDQAIPHAFRNRFSTQYRCYSVSMFAGSDRSDVEKGGKIIMPPSALDQLSRLNI
TYPMLFKLTNRKTDRMTHCGVLEFVAEEGICYLPHWMMQNLLLEEGGLVQVESVNLMVAT
YSKFQPQAPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS
IIECDMNVDFDAPLGYKEPERHYQPEDTSDIETDHTAFVPIDLGFRAFTGAGNRLDGKKK
GVDPSPAQINPEDIKRGIPNYEFKIGKITFIRNSRPQPKRIEEDSGTSRFIAFSGEGQSL
RKKGRKP
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccttcaatatgtttgatcaggcaattccacatgcctttcggaatcgtttctca
acacagtaccgatgctattcagtctctatgtttgcagggagcgatcgatcagatgtagag
aaaggaggcaaaataataatgccaccatctgctctggatcaactgagtcgtctgaatatt
acatacccaatgctttttaaacttacaaacagaaaaactgaccgaatgacgcactgtggt
gtcctggaatttgtggcagaagaaggtatctgttacctgcctcactggatgatgcagaac
ctactgctggaggaagggggccttgttcaggtagagagcgtgaacctcatggttgccact
tactccaaatttcagccacaagctccagatttcctagatatcacaaacccaaaagctgta
ttggaaaatgccttaaggaactttgcctgtttaacaaccggtgatgtaattgctatcaac
tataatgagaagatctatgagcttcgagtcatggaaacaaaaccagataaagctgtttcc
atcattgagtgtgatatgaatgtagattttgatgctccattggggtataaagagcccgag
cgacattatcagcctgaagacacctcggatatagagactgaccacactgcctttgttcca
attgatttaggtttcagggcatttactggtgctgggaatcggctagatgggaagaagaaa
ggagtcgatcccagtccagcacaaatcaacccggaagatattaaaagaggaatcccaaac
tacgagttcaaaataggaaaaatcacctttatcaggaactcacgaccacagcctaagcga
atagaggaggattctgggaccagcaggtttattgcattctctggagaaggacagtcttta
cgcaagaaaggaaggaagccttag
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