Roseimaritima ulvae: UC8_15080
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Entry
UC8_15080 CDS
T06179
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rul
Roseimaritima ulvae
Pathway
rul03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UC8_15080 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rul03021
]
UC8_15080 (rpoB)
03400 DNA repair and recombination proteins [BR:
rul03400
]
UC8_15080 (rpoB)
Enzymes [BR:
rul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UC8_15080 (rpoB)
Transcription machinery [BR:
rul03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UC8_15080 (rpoB)
DNA repair and recombination proteins [BR:
rul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UC8_15080 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QEG39513
UniProt:
A0A5B9QZS4
LinkDB
All DBs
Position
complement(2108903..2112625)
Genome browser
AA seq
1240 aa
AA seq
DB search
MATTSQRRLEPTTVRHFGSDRRGFDLPDLTALQTVSYSHFLQEEVPSTTRKDLGMEGVLR
EIFPISSYDGNINLEYLRYELGKPRYTPQECRQLRLTYGRPLRVWLRLLRDEPVDEEVYL
GDLPIMMGGGEFIINGAERVVVSQLHRSPGVDFVLEQEGTSDRKLPSCRVIPERGSWIEV
NVTKKDALTVRIDQSGKFAATTLLRAMDPSLSTDADLLRAFYETAEHEITDGRSAAKIEG
HVAVDDIIYPSSSDRAGEIIIEAGHKITKNVAETICTSGVTSVETMSGPKVPLIFNTLAE
DNTSSHEEALLRIYQRLRPGNPPQLEKAKTLFNEKFYDENRYRLGKVGRFRLNRKLGTEV
SEDVMTLRHEDMISAIKYLLDLFDPDSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKL
RRTVQERMSLKDVEDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLTHERRLS
ALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLVTPY
RKIKDGRVTDEVVWLRADEENESYVAPADSDVDGDALVPGPNMIARFRSDFEIVQPEQVH
YMDVAPAQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVAEPPIVGTGMERQVAQN
SAMVVRARRAGKVTYADAKRIEIGSDHYDLKKYQGLNERTCLNQKPLVQVGDKVEKNQII
ADGAATRGGELALGRNVLVGFMSFDGYNYEDAIILSEELVKNDTYTSIHIEDFDVEIRET
KLGREEFTRDIPNVSEKALRNLDDSGIVQVGTYVRPGDVLVGKVSPKSKTELTPEEKLLH
AIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLTEDERKEFEKELKDVESEGNAEI
ASTFTSMINELEAAGNTKLKDAEGNPLSDGQDPKFIAEQAINFQINRVLDQIKKDDVRDE
VEKVYKQQWGNVEAAIDARDRKLNSMKRGDELRSGVLQMVKVYIANRRVISVGDKMAGRH
GNKGVIGKILPAEDMPFLPDGTPLQIMLNPLGVPSRMNVGQILETHLGWAGAKLGFQAIT
PVFDGASEEDINQCLEEAGLPRHGKVRLLDGRTGEPMEQETTVGYIYMLKLHHLVDDKVH
ARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKI
YESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEKRPI
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggctactacgtcccaacgtcgtttagaacccaccaccgttcgtcattttggttccgat
cgcaggggttttgaccttcccgatttgactgccctgcagacggtcagctattcgcatttc
ttgcaagaagaggtcccctcgaccacgcgtaaagacctcggcatggaaggcgtgctgcgg
gagatcttcccgatcagcagctatgacggcaatatcaacctggaatatctccgctacgaa
ctgggtaaaccccgttacaccccgcaggaatgccgtcaactgcgtttgacctacggtcgt
ccgctgcgggtttggctgcgattgttgcgtgacgaaccggtcgacgaagaagtctacctg
ggcgacctgccgatcatgatgggcggcggcgaattcatcatcaacggtgccgaacgtgtg
gtcgtttcgcagctgcaccgcagccccggtgtcgacttcgtgctcgaacaagagggcacc
agcgaccgcaagctgcccagctgccgcgtgatccccgagcgcggttcttggatcgaagtc
aatgtcaccaagaaagacgcgctcacggtccgcatcgaccaaagcggtaagtttgccgct
acgaccttgctgcgagcgatggaccccagcttgtccaccgacgccgacctgctgcgcgcc
ttctacgaaacggccgaacatgaaatcaccgacggccgcagcgccgccaagatcgaaggc
cacgtcgctgtcgacgacatcatctatccgtccagcagtgaccgggcgggtgaaatcatc
atcgaagccggccacaagatcaccaaaaatgtcgccgaaacgatctgcacctccggcgtc
acgtcggtggaaaccatgtcgggtcccaaggtgccgttgatcttcaacaccctggccgaa
gacaacaccagcagccacgaagaagctctgcttcgcatctaccagcgtttgcggccgggc
aacccgccgcagttggaaaaagcgaaaacgctgttcaacgaaaagttctacgatgaaaac
cgctaccgcctgggcaaggtcggacgcttccgcctgaaccgcaaactgggcaccgaagtc
agcgaagacgtgatgacgttgcgtcacgaggacatgatttcggcgatcaagtacctgctg
gatctgttcgatcccgactccggtgccgagatcgacgacatcgaccacttgggcaaccgc
cgtttgcgaacgatcgacgaactggccagcgaagaactccgcaagggcttcttgaagctg
cggcgtaccgtgcaggaacgcatgagtctgaaggacgtcgaggacatgacgcctcgatcg
ttgatcaaccccaagagcgtttcggcagcgatcgacttcttcttcggccgcggcgaactt
tcgcaggtcgttgaccaaaccaacccgctctcgcaactgacccacgaacgtcgtctctcg
gcgttgggcccgggcggcctgaaccgtaaacgtgcgggctttgaagtccgtgacgtgcac
atttctcactacggtcgaatctgcccgattgaaacgccggaaggtacgaacatcggtctg
atcagctcgctggctatttacgccggcgtggacgattacggcttcctggtcacgccctac
cgaaaaatcaaagacggtcgggtcaccgatgaagtggtctggttgcgagccgacgaagaa
aacgaatcgtacgtcgccccggccgactccgatgtcgatggggacgccttggtgcccggc
cccaacatgatcgctcgtttccgcagcgactttgaaatcgttcagcccgaacaggtccac
tacatggacgtggcgccggcccaaatggtgggcgtctcggccgggttgatcccgttcctc
gagcacgacgatgcgaaccgcgcattgatgggttcgaacatgcagcggcaagccgtgccg
ctgttggtcgccgaaccgcccatcgtgggcaccggaatggaacgccaggtcgcgcagaac
agcgccatggtggtccgtgcccgccgcgccggcaaagtcacctacgccgacgccaaacga
atcgaaatcggcagcgaccactacgacttgaaaaaataccaaggtctgaacgaacgcacc
tgcttgaaccagaaacctctggtgcaagttggcgacaaggtcgaaaagaatcagatcatc
gccgacggagccgccacccgtggtggcgaactggcgttgggacgcaacgtgttggtcggg
ttcatgtccttcgacggatataactacgaagacgcgatcatcctgtccgaggaactggtc
aagaacgacacctacacctcgatccacatcgaggactttgatgtcgaaattcgtgaaacc
aaattgggtcgggaagaattcacccgcgacatccccaatgtttccgaaaaagcacttcgc
aacttggacgattccgggatcgtgcaagtcggtacctacgtgcgtcccggagacgtgctg
gtgggcaaagtcagccccaagagcaagaccgaactgacgcccgaagaaaaactgctgcac
gccatctttggccgtgccggtgaagacgtcaaaaacgattcgctggaagtcccctcgggc
atcgaaggaatcgtgatcgacacccagaagttctcgcgccgcatgagtctgaccgaagac
gaacgcaaggaattcgagaaagaactgaaggatgtggaaagcgaaggcaatgccgaaatc
gccagcaccttcaccagcatgatcaatgaactggaagcggctgggaacaccaagctgaaa
gacgccgagggtaacccgctgtccgacggccaggatcccaagttcatcgccgaacaagcg
atcaacttccagatcaaccgcgtcctggaccagatcaagaaagacgacgtccgcgacgaa
gtcgaaaaggtttacaagcagcaatggggcaacgtcgaagccgccatcgacgctcgcgac
cgcaagctgaacagcatgaaacgcggcgatgagctgcggagtggtgtgctgcagatggtc
aaggtctacatcgccaaccgccgcgtgatcagcgtgggggacaagatggccggccgtcac
ggtaacaaaggggtcatcggcaagatcttgccggccgaggacatgcccttcctacccgac
ggtacgccgctgcagatcatgttgaatccgctgggcgttcccagccgtatgaacgtcggt
cagattttggaaacgcacctgggctgggctggagccaagttgggcttccaagccatcacg
ccggtgttcgacggagccagcgaagaagacatcaaccagtgtctggaagaagccggtttg
ccgcgacacgggaaagtccgcttgctcgacggccgcaccggcgagccgatggagcaggaa
accaccgttggctacatctacatgctgaaactgcatcacctggtcgacgacaaggtgcac
gcacgcagcaccggcccgtattcgctgatcactcagcaaccgctgggcggcaaagctcgc
ttcggcggacagcgttttggagaaatggaagtttgggctctggaagcgtatggagcggct
tacattttgcaggaattgctcaccgtcaagagtgacgatgtggaaggacgcaccaagatt
tacgagtcgatggtcaagggcgaaaacaccttggaagccggtacgccggccagcttcgac
gtgcttaccaacgaaattcgtgggctggcactgaatatgcaactggaaaaacgcccgatc
tag
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integrated database retrieval system
