Runella sp. SP2: DTQ70_02975
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Entry
DTQ70_02975 CDS
T05690
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rup
Runella sp. SP2
Pathway
rup03410
Base excision repair
rup03430
Mismatch repair
rup03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DTQ70_02975 (recJ)
03430 Mismatch repair
DTQ70_02975 (recJ)
03440 Homologous recombination
DTQ70_02975 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rup03400
]
DTQ70_02975 (recJ)
DNA repair and recombination proteins [BR:
rup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DTQ70_02975 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DTQ70_02975 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DTQ70_02975 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF5817
Motif
Other DBs
NCBI-ProteinID:
AYQ31202
UniProt:
A0A3G3GIT0
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Position
complement(746108..747835)
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AA seq
575 aa
AA seq
DB search
MNTKRWTFRTTLSESQQIQAEALAKSINVNPFLGQLLVQRGIRTFDEAKNFFRPSLAHLH
NPFLMKDMDKAVARLLRAFENNEKIIIYGDYDVDGTTSVALFYGFLKKYYTQLEYYIPDR
YTEGYGVSWQGIDYAEEQGVKLIVTLDCGIKSADKVAEAQRRGIDFIICDHHRPDQHLPP
AVAVLDPKRDDCPYPYKELTGCGVGFKLLQALCEQGMGDEEVLYQQLDLLVVSIAADIVH
ITGENRALAFFGLKELNKHKRPGINALVALAGLRNELDINSVVFGLAPRINAAGRIAHAK
EAVRLLLSKDKTEAEAFAQEINQHNSDRRNFDTSITDEALNMIREDEWMLSANSTVLYKE
DWHKGVVGIVASRCIEHFFRPTVILTNSHGKAAGSARSVPGFDVYEAIEACSDLLEQFGG
HTFAAGLSLPVENVDAFRKKFNNIVTERIRPEQLTPLIEIDMDLDLNAITPKFYSIVKQM
APFGPENMTPVFASHQVRMSGNPTLMKEKHLKLEVFQPSPQGPTKYTAIGFGMVDFYPKL
MSGKPFSIAYTIEENTFRDKTTLQLYLKDIRFEEG
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaataccaaacgttggacattccgaacaacactttcagaatcgcaacaaatccaagcg
gaagcccttgccaaatccatcaatgtcaatccatttttgggacaactccttgtgcaacgt
gggattaggacttttgatgaggccaaaaacttttttagaccttcgctcgctcatctccat
aaccctttcttaatgaaggacatggacaaagccgtggcgagactattacgtgcttttgaa
aacaacgaaaaaatcatcatttatggagattacgacgtggatggcacgacatcggtggcg
ctcttctatggttttctcaaaaaatactacacacagctcgaatattacattcccgaccgt
tacactgagggctatggggtttcgtggcaaggaatcgattatgccgaagaacaaggggtt
aagctcattgtgaccctcgactgtggcatcaaatcggccgataaagtagccgaagcccaa
cgtagaggcatcgactttatcatttgtgaccaccaccgtcccgaccagcaccttcctcct
gcggtggccgttcttgaccccaaacgcgatgattgcccttatccttataaagagttgacg
ggttgcggcgtcgggtttaaactcctacaagccctttgcgaacaaggaatgggtgatgaa
gaggtcttgtatcaacagcttgatttattggtcgtcagcattgccgctgatattgtgcat
attacgggcgaaaaccgtgcgttggccttttttggcctcaaagaacttaataaacacaaa
cgcccgggcatcaatgcgctcgtggcgctggcaggactgcgcaacgaactcgacatcaac
agtgtggttttcggactggcgccacgaatcaatgccgctgggcggattgcgcacgccaaa
gaggcggttcgacttcttttgtcaaaagacaaaacagaagccgaggcatttgcccaagaa
attaatcagcacaacagcgaccgccgaaattttgacaccagtattaccgacgaagccttg
aacatgattcgtgaagacgaatggatgctgtcggccaacagtacggtgctttataaggaa
gattggcataaaggcgttgtgggaattgtggcgagtcgctgcattgaacattttttccgc
ccaacggttatcctgaccaattcacacggcaaagcggcgggttcggcacgctccgtccca
ggatttgatgtgtatgaagccatcgaagcctgctccgatttattggaacaatttggggga
catacctttgccgccgggctttcattgcccgttgagaacgttgatgcttttcgcaaaaag
ttcaataacattgtaactgaacgtattcggccagagcaacttacaccgttgattgagatt
gatatggatttggatctcaacgccattacacccaaattttacagcatcgtcaagcagatg
gctccttttggccctgaaaacatgacgcccgtatttgcgagtcaccaagtgaggatgagc
ggaaatccgacgttgatgaaagaaaagcacttaaaattggaagtgtttcagcccagcccc
caaggccccaccaaatacaccgcgattggctttggcatggtcgatttttacccaaaactt
atgtcgggcaagccattttcaatcgcttataccatcgaagaaaatacgtttcgcgataag
acgacgttacagttgtatttgaaagacatacgatttgaagaaggttga
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